Guide to the Human Genome
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Name: ABCC5 Sequence: fasta or formatted (1437aa) NCBI GI: 66529005
Description:

ATP-binding cassette, sub-family C, member 5 isoform 1

Referenced in:

ATP-binding Cassette Proteins

Other entries for this name:
alt prot [208aa] ATP-binding cassette, sub-family C, member 5 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5        108           3
 C cysteine            1.3         19           2
 D aspartate           4.0         58           2
 E glutamate           6.4         92           4
 F phenylalanine       4.4         63           2
 G glycine             6.2         89           2
 H histidine           2.6         37           2
 I isoleucine          6.8         98           2
 K lysine              5.8         83           2
 L leucine            11.6        167           3
 M methionine          3.0         43           2
 N asparagine          3.1         45           2
 P proline             3.4         49           2
 Q glutamine           3.8         54           2
 R arginine            5.8         84           2
 S serine              8.2        118           2
 T threonine           5.6         81           3
 V valine              6.9         99           3
 W tryptophan          1.2         17           2
 Y tyrosine            2.3         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family C, member 5 isoform... 
ABCC12                0.403   ATP-binding cassette protein C12 
ABCC11                0.356   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.356   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.331   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC9                 0.233   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.228   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC1                 0.226   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC4                 0.225   ATP-binding cassette, sub-family C, member 4 isofor...
ABCC2                 0.225   ATP-binding cassette, sub-family C (CFTR/MRP), member...
ABCC8                 0.223   ATP-binding cassette, sub-family C, member 8 
ABCC3                 0.212   ATP-binding cassette, sub-family C, member 3 isoform ...
ABCC10                0.203   ATP-binding cassette, sub-family C, member 10 
ABCC9                 0.191   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC1                 0.188   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.185   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.185   ATP-binding cassette, sub-family C, member 1 isofor...
LOC100292715          0.181   PREDICTED: hypothetical protein 
ABCC6                 0.181   ATP-binding cassette, sub-family C, member 6 isofor...
ABCC1                 0.161   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC5                 0.136   ATP-binding cassette, sub-family C, member 5 isoform...
CFTR                  0.098   cystic fibrosis transmembrane conductance regulator ...
ABCC4                 0.092   ATP-binding cassette, sub-family C, member 4 isofor...
ABCB1                 0.077   ATP-binding cassette, subfamily B, member 1 
ABCB4                 0.076   ATP-binding cassette, subfamily B, member 4 isoform C...
ABCB4                 0.075   ATP-binding cassette, subfamily B, member 4 isoform A...
ABCB4                 0.073   ATP-binding cassette, subfamily B, member 4 isoform B...
ABCB11                0.064   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB5                 0.064   ATP-binding cassette, sub-family B, member 5 
TAP2                  0.051   transporter 2, ATP-binding cassette, sub-family B is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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