Guide to the Human Genome
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Name: ABCC10 Sequence: fasta or formatted (1464aa) NCBI GI: 25914749
Description:

ATP-binding cassette, sub-family C, member 10

Referenced in:

ATP-binding Cassette Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5        154           3
 C cysteine            1.8         27           1
 D aspartate           3.1         45           2
 E glutamate           4.9         72           3
 F phenylalanine       2.9         42           2
 G glycine             8.3        122           2
 H histidine           2.1         31           1
 I isoleucine          3.6         53           2
 K lysine              2.5         36           2
 L leucine            18.7        274           5
 M methionine          1.2         18           1
 N asparagine          2.3         34           2
 P proline             5.7         84           2
 Q glutamine           5.5         80           2
 R arginine            5.3         78           2
 S serine              6.3         92           2
 T threonine           4.4         64           2
 V valine              6.6         96           2
 W tryptophan          1.8         26           2
 Y tyrosine            2.5         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family C, member 10 
ABCC3                 0.244   ATP-binding cassette, sub-family C, member 3 isoform ...
ABCC1                 0.240   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC2                 0.236   ATP-binding cassette, sub-family C (CFTR/MRP), member...
ABCC4                 0.231   ATP-binding cassette, sub-family C, member 4 isofor...
ABCC9                 0.215   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.212   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC8                 0.212   ATP-binding cassette, sub-family C, member 8 
ABCC9                 0.212   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC1                 0.208   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.207   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC6                 0.202   ATP-binding cassette, sub-family C, member 6 isofor...
LOC100292715          0.200   PREDICTED: hypothetical protein 
ABCC5                 0.198   ATP-binding cassette, sub-family C, member 5 isoform...
ABCC12                0.192   ATP-binding cassette protein C12 
ABCC1                 0.191   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC11                0.189   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.189   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.174   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC1                 0.130   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC4                 0.120   ATP-binding cassette, sub-family C, member 4 isofor...
CFTR                  0.084   cystic fibrosis transmembrane conductance regulator ...
ABCB1                 0.063   ATP-binding cassette, subfamily B, member 1 
TAP2                  0.057   transporter 2, ATP-binding cassette, sub-family B is...
ABCB10                0.051   ATP-binding cassette, sub-family B, member 10 [Homo...
ABCB8                 0.049   ATP-binding cassette, sub-family B, member 8 
TAP2                  0.048   transporter 2, ATP-binding cassette, sub-family B is...
TAP1                  0.045   transporter 1, ATP-binding cassette, sub-family B [Ho...
ABCB9                 0.044   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.044   ATP-binding cassette, sub-family B (MDR/TAP), member...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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