Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ABCB5 Sequence: fasta or formatted (812aa) NCBI GI: 148612844
Description:

ATP-binding cassette, sub-family B, member 5

Referenced in:

ATP-binding Cassette Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         80           2
 C cysteine            0.9          7           1
 D aspartate           4.3         35           2
 E glutamate           6.7         54           2
 F phenylalanine       4.4         36           2
 G glycine             6.7         54           2
 H histidine           2.1         17           1
 I isoleucine          7.9         64           2
 K lysine              6.5         53           2
 L leucine             9.7         79           3
 M methionine          2.8         23           1
 N asparagine          4.1         33           2
 P proline             2.6         21           1
 Q glutamine           4.7         38           1
 R arginine            4.7         38           1
 S serine              6.8         55           2
 T threonine           5.7         46           2
 V valine              6.4         52           2
 W tryptophan          0.5          4           1
 Y tyrosine            2.8         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family B, member 5 
ABCB4                 0.597   ATP-binding cassette, subfamily B, member 4 isoform A...
ABCB4                 0.593   ATP-binding cassette, subfamily B, member 4 isoform B...
ABCB1                 0.588   ATP-binding cassette, subfamily B, member 1 
ABCB4                 0.556   ATP-binding cassette, subfamily B, member 4 isoform C...
ABCB11                0.484   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB10                0.184   ATP-binding cassette, sub-family B, member 10 [Homo...
ABCB8                 0.171   ATP-binding cassette, sub-family B, member 8 
ABCB9                 0.165   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.165   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB9                 0.155   ATP-binding cassette, sub-family B (MDR/TAP), member ...
TAP1                  0.139   transporter 1, ATP-binding cassette, sub-family B [Ho...
TAP2                  0.134   transporter 2, ATP-binding cassette, sub-family B is...
ABCC5                 0.115   ATP-binding cassette, sub-family C, member 5 isoform...
ABCC2                 0.114   ATP-binding cassette, sub-family C (CFTR/MRP), member...
TAP2                  0.114   transporter 2, ATP-binding cassette, sub-family B is...
ABCB6                 0.113   ATP-binding cassette, sub-family B, member 6 
ABCC9                 0.109   ATP-binding cassette, sub-family C, member 9 isofor...
ABCB7                 0.107   ATP-binding cassette, sub-family B, member 7 
ABCC9                 0.106   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.106   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC12                0.106   ATP-binding cassette protein C12 
ABCC8                 0.101   ATP-binding cassette, sub-family C, member 8 
ABCC1                 0.078   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.078   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.078   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.078   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC3                 0.075   ATP-binding cassette, sub-family C, member 3 isoform ...
ABCC10                0.073   ATP-binding cassette, sub-family C, member 10 
ABCC6                 0.071   ATP-binding cassette, sub-family C, member 6 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press