Guide to the Human Genome
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Name: ABCB6 Sequence: fasta or formatted (842aa) NCBI GI: 9955963
Description:

ATP-binding cassette, sub-family B, member 6

Referenced in:

ATP-binding Cassette Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         72           3
 C cysteine            1.2         10           1
 D aspartate           3.4         29           1
 E glutamate           5.1         43           2
 F phenylalanine       4.3         36           3
 G glycine             8.2         69           3
 H histidine           1.2         10           1
 I isoleucine          5.2         44           3
 K lysine              2.3         19           1
 L leucine            13.7        115           4
 M methionine          1.9         16           1
 N asparagine          3.1         26           1
 P proline             3.4         29           1
 Q glutamine           5.2         44           2
 R arginine            7.1         60           3
 S serine              6.4         54           2
 T threonine           6.1         51           2
 V valine              7.8         66           2
 W tryptophan          2.6         22           3
 Y tyrosine            3.2         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family B, member 6 
ABCB7                 0.270   ATP-binding cassette, sub-family B, member 7 
ABCB1                 0.130   ATP-binding cassette, subfamily B, member 1 
ABCB10                0.130   ATP-binding cassette, sub-family B, member 10 [Homo...
ABCB8                 0.129   ATP-binding cassette, sub-family B, member 8 
ABCB4                 0.128   ATP-binding cassette, subfamily B, member 4 isoform B...
ABCB4                 0.128   ATP-binding cassette, subfamily B, member 4 isoform C...
ABCB4                 0.128   ATP-binding cassette, subfamily B, member 4 isoform A...
ABCB9                 0.127   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.127   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB11                0.122   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB9                 0.118   ATP-binding cassette, sub-family B (MDR/TAP), member ...
TAP2                  0.106   transporter 2, ATP-binding cassette, sub-family B is...
ABCB5                 0.106   ATP-binding cassette, sub-family B, member 5 
TAP1                  0.099   transporter 1, ATP-binding cassette, sub-family B [Ho...
TAP2                  0.092   transporter 2, ATP-binding cassette, sub-family B is...
ABCC5                 0.080   ATP-binding cassette, sub-family C, member 5 isoform...
ABCC3                 0.078   ATP-binding cassette, sub-family C, member 3 isoform ...
ABCC10                0.072   ATP-binding cassette, sub-family C, member 10 
ABCC11                0.072   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.072   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC8                 0.071   ATP-binding cassette, sub-family C, member 8 
ABCC1                 0.071   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.071   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.071   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.071   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC2                 0.069   ATP-binding cassette, sub-family C (CFTR/MRP), member...
LOC100292715          0.069   PREDICTED: hypothetical protein 
ABCC4                 0.068   ATP-binding cassette, sub-family C, member 4 isofor...
ABCC6                 0.068   ATP-binding cassette, sub-family C, member 6 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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