Guide to the Human Genome
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Name: ABCD1 Sequence: fasta or formatted (745aa) NCBI GI: 7262393
Description:

ATP-binding cassette, sub-family D (ALD), member 1

Referenced in:

ATP-binding Cassette Proteins
Peroxisomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         80           3
 C cysteine            1.2          9           1
 D aspartate           3.2         24           1
 E glutamate           6.8         51           3
 F phenylalanine       3.1         23           1
 G glycine             7.4         55           2
 H histidine           2.3         17           2
 I isoleucine          4.3         32           2
 K lysine              3.8         28           2
 L leucine            12.6         94           2
 M methionine          2.3         17           1
 N asparagine          1.7         13           1
 P proline             4.7         35           3
 Q glutamine           4.8         36           2
 R arginine            7.9         59           2
 S serine              6.3         47           2
 T threonine           3.9         29           1
 V valine              7.7         57           3
 W tryptophan          1.6         12           1
 Y tyrosine            3.6         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family D (ALD), member 1 [H... 
ABCD2                 0.637   ATP-binding cassette, sub-family D, member 2 
ABCD3                 0.298   ATP-binding cassette, sub-family D, member 3 isoform ...
ABCD4                 0.139   ATP-binding cassette, sub-family D, member 4 
ABCD3                 0.066   ATP-binding cassette, sub-family D, member 3 isofor...
ABCB4                 0.032   ATP-binding cassette, subfamily B, member 4 isoform C...
ABCC4                 0.030   ATP-binding cassette, sub-family C, member 4 isofor...
ABCC4                 0.030   ATP-binding cassette, sub-family C, member 4 isofor...
ABCB5                 0.029   ATP-binding cassette, sub-family B, member 5 
ABCB9                 0.028   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.028   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB9                 0.027   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB1                 0.026   ATP-binding cassette, subfamily B, member 1 
TAP1                  0.026   transporter 1, ATP-binding cassette, sub-family B [Ho...
ABCB4                 0.026   ATP-binding cassette, subfamily B, member 4 isoform A...
ABCB4                 0.026   ATP-binding cassette, subfamily B, member 4 isoform B...
ABCC2                 0.026   ATP-binding cassette, sub-family C (CFTR/MRP), member...
ABCB7                 0.026   ATP-binding cassette, sub-family B, member 7 
ABCC8                 0.026   ATP-binding cassette, sub-family C, member 8 
ABCC3                 0.025   ATP-binding cassette, sub-family C, member 3 isoform ...
ABCB6                 0.025   ATP-binding cassette, sub-family B, member 6 
TAP2                  0.024   transporter 2, ATP-binding cassette, sub-family B is...
LOC100292715          0.023   PREDICTED: hypothetical protein 
TAP2                  0.022   transporter 2, ATP-binding cassette, sub-family B is...
ABCB11                0.022   ATP-binding cassette, sub-family B (MDR/TAP), member...
CFTR                  0.022   cystic fibrosis transmembrane conductance regulator ...
ABCC6                 0.021   ATP-binding cassette, sub-family C, member 6 isofor...
ABCC10                0.020   ATP-binding cassette, sub-family C, member 10 
ABCB10                0.019   ATP-binding cassette, sub-family B, member 10 [Homo...
ABCC11                0.019   ATP-binding cassette, sub-family C, member 11 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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