Guide to the Human Genome
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Name: TAP2 Sequence: fasta or formatted (653aa) NCBI GI: 73747917
Description:

transporter 2, ATP-binding cassette, sub-family B isoform 2

Referenced in:

ATP-binding Cassette Proteins
HLA and Related Proteins

Other entries for this name:
alt prot [703aa] transporter 2, ATP-binding cassette, sub-family B isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         53           3
 C cysteine            1.5         10           1
 D aspartate           3.8         25           2
 E glutamate           4.6         30           2
 F phenylalanine       4.0         26           3
 G glycine             8.4         55           2
 H histidine           1.5         10           1
 I isoleucine          2.8         18           1
 K lysine              2.8         18           1
 L leucine            16.8        110           3
 M methionine          2.5         16           1
 N asparagine          2.3         15           2
 P proline             4.9         32           2
 Q glutamine           5.8         38           2
 R arginine            6.0         39           2
 S serine              7.0         46           2
 T threonine           4.6         30           2
 V valine              7.8         51           2
 W tryptophan          1.8         12           1
 Y tyrosine            2.9         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transporter 2, ATP-binding cassette, sub-family B is... 
TAP2                  0.986   transporter 2, ATP-binding cassette, sub-family B is...
ABCB9                 0.332   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.332   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB9                 0.305   ATP-binding cassette, sub-family B (MDR/TAP), member ...
TAP1                  0.292   transporter 1, ATP-binding cassette, sub-family B [Ho...
ABCB10                0.211   ATP-binding cassette, sub-family B, member 10 [Homo...
ABCB8                 0.206   ATP-binding cassette, sub-family B, member 8 
ABCB1                 0.158   ATP-binding cassette, subfamily B, member 1 
ABCB4                 0.156   ATP-binding cassette, subfamily B, member 4 isoform B...
ABCB4                 0.156   ATP-binding cassette, subfamily B, member 4 isoform C...
ABCB4                 0.156   ATP-binding cassette, subfamily B, member 4 isoform A...
ABCB11                0.143   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB5                 0.139   ATP-binding cassette, sub-family B, member 5 
ABCB6                 0.119   ATP-binding cassette, sub-family B, member 6 
ABCC10                0.108   ATP-binding cassette, sub-family C, member 10 
ABCC5                 0.096   ATP-binding cassette, sub-family C, member 5 isoform...
ABCB7                 0.094   ATP-binding cassette, sub-family B, member 7 
ABCC9                 0.089   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.089   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.089   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC2                 0.086   ATP-binding cassette, sub-family C (CFTR/MRP), member...
ABCC1                 0.085   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.085   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.085   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.085   ATP-binding cassette, sub-family C, member 1 isofor...
LOC100292715          0.083   PREDICTED: hypothetical protein 
ABCC6                 0.081   ATP-binding cassette, sub-family C, member 6 isofor...
ABCC8                 0.080   ATP-binding cassette, sub-family C, member 8 
ABCC4                 0.076   ATP-binding cassette, sub-family C, member 4 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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