Guide to the Human Genome
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Name: ABCB4 Sequence: fasta or formatted (1232aa) NCBI GI: 9961252
Description:

ATP-binding cassette, subfamily B, member 4 isoform C

Referenced in:

ATP-binding Cassette Proteins

Other entries for this name:
alt prot [1279aa] ATP-binding cassette, subfamily B, member 4 isoform A
alt prot [1286aa] ATP-binding cassette, subfamily B, member 4 isoform B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1        125           2
 C cysteine            0.7          9           1
 D aspartate           4.2         52           2
 E glutamate           5.9         73           3
 F phenylalanine       5.6         69           2
 G glycine             8.0         98           2
 H histidine           1.3         16           1
 I isoleucine          8.0         99           3
 K lysine              6.4         79           2
 L leucine             9.5        117           4
 M methionine          2.0         25           2
 N asparagine          4.1         51           2
 P proline             2.5         31           2
 Q glutamine           4.9         60           2
 R arginine            4.3         53           2
 S serine              6.7         82           2
 T threonine           5.4         66           2
 V valine              6.8         84           2
 W tryptophan          1.0         12           1
 Y tyrosine            2.5         31           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, subfamily B, member 4 isoform C... 
ABCB4                 0.990   ATP-binding cassette, subfamily B, member 4 isoform A...
ABCB4                 0.987   ATP-binding cassette, subfamily B, member 4 isoform B...
ABCB1                 0.753   ATP-binding cassette, subfamily B, member 1 
ABCB11                0.493   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB5                 0.364   ATP-binding cassette, sub-family B, member 5 
ABCB10                0.137   ATP-binding cassette, sub-family B, member 10 [Homo...
ABCB8                 0.124   ATP-binding cassette, sub-family B, member 8 
ABCB9                 0.122   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.122   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB9                 0.115   ATP-binding cassette, sub-family B (MDR/TAP), member ...
TAP1                  0.098   transporter 1, ATP-binding cassette, sub-family B [Ho...
TAP2                  0.092   transporter 2, ATP-binding cassette, sub-family B is...
ABCC5                 0.090   ATP-binding cassette, sub-family C, member 5 isoform...
ABCB6                 0.089   ATP-binding cassette, sub-family B, member 6 
ABCC12                0.084   ATP-binding cassette protein C12 
TAP2                  0.084   transporter 2, ATP-binding cassette, sub-family B is...
ABCC8                 0.075   ATP-binding cassette, sub-family C, member 8 
ABCB7                 0.074   ATP-binding cassette, sub-family B, member 7 
ABCC2                 0.052   ATP-binding cassette, sub-family C (CFTR/MRP), member...
ABCC11                0.051   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.051   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC1                 0.050   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.050   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.050   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.050   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC9                 0.050   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC6                 0.049   ATP-binding cassette, sub-family C, member 6 isofor...
LOC100292715          0.049   PREDICTED: hypothetical protein 
ABCC10                0.049   ATP-binding cassette, sub-family C, member 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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