Guide to the Human Genome
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Name: ABCC2 Sequence: fasta or formatted (1545aa) NCBI GI: 4557481
Description:

ATP-binding cassette, sub-family C (CFTR/MRP), member 2

Referenced in:

ATP-binding Cassette Proteins
DNA Transposon and Retrovirus-related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         88           2
 C cysteine            1.3         20           1
 D aspartate           4.4         68           3
 E glutamate           5.2         81           3
 F phenylalanine       5.5         85           2
 G glycine             5.5         85           2
 H histidine           1.7         26           1
 I isoleucine          7.4        114           3
 K lysine              6.0         92           5
 L leucine            12.8        198           2
 M methionine          2.5         38           2
 N asparagine          4.6         71           2
 P proline             3.0         46           3
 Q glutamine           4.3         66           2
 R arginine            4.4         68           2
 S serine              8.6        133           2
 T threonine           6.0         92           2
 V valine              7.1        109           2
 W tryptophan          1.7         27           1
 Y tyrosine            2.5         38           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family C (CFTR/MRP), member... 
ABCC1                 0.446   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC3                 0.426   ATP-binding cassette, sub-family C, member 3 isoform ...
ABCC1                 0.401   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.401   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.399   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC6                 0.323   ATP-binding cassette, sub-family C, member 6 isofor...
LOC100292715          0.312   PREDICTED: hypothetical protein 
ABCC4                 0.267   ATP-binding cassette, sub-family C, member 4 isofor...
ABCC9                 0.233   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.232   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.230   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC1                 0.230   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC8                 0.227   ATP-binding cassette, sub-family C, member 8 
ABCC10                0.225   ATP-binding cassette, sub-family C, member 10 
ABCC12                0.223   ATP-binding cassette protein C12 
ABCC5                 0.208   ATP-binding cassette, sub-family C, member 5 isoform...
ABCC11                0.206   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.206   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.188   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC4                 0.139   ATP-binding cassette, sub-family C, member 4 isofor...
ABCC3                 0.100   ATP-binding cassette, sub-family C, member 3 isofor...
CFTR                  0.085   cystic fibrosis transmembrane conductance regulator ...
ABCB1                 0.071   ATP-binding cassette, subfamily B, member 1 
ABCB11                0.064   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB5                 0.059   ATP-binding cassette, sub-family B, member 5 
ABCB10                0.052   ATP-binding cassette, sub-family B, member 10 [Homo...
ABCB9                 0.047   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.047   ATP-binding cassette, sub-family B (MDR/TAP), member...
TAP1                  0.044   transporter 1, ATP-binding cassette, sub-family B [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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