Guide to the Human Genome
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Name: ABCC11 Sequence: fasta or formatted (1382aa) NCBI GI: 21729873
Description:

ATP-binding cassette, sub-family C, member 11 isoform a

Referenced in:

ATP-binding Cassette Proteins

Other entries for this name:
alt mRNA [1382aa] ATP-binding cassette, sub-family C, member 11 isoform a
alt prot [1344aa] ATP-binding cassette, sub-family C, member 11 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         89           2
 C cysteine            2.1         29           2
 D aspartate           3.4         47           2
 E glutamate           5.6         78           3
 F phenylalanine       5.1         70           3
 G glycine             6.6         91           2
 H histidine           2.2         31           2
 I isoleucine          7.5        103           2
 K lysine              4.7         65           2
 L leucine            12.5        173           3
 M methionine          3.0         41           2
 N asparagine          3.3         46           2
 P proline             3.7         51           2
 Q glutamine           4.2         58           2
 R arginine            5.0         69           2
 S serine              8.1        112           3
 T threonine           5.4         75           2
 V valine              7.3        101           2
 W tryptophan          1.2         17           2
 Y tyrosine            2.6         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family C, member 11 isofor... 
ABCC11                1.000   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.966   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC12                0.463   ATP-binding cassette protein C12 
ABCC5                 0.368   ATP-binding cassette, sub-family C, member 5 isoform...
ABCC4                 0.251   ATP-binding cassette, sub-family C, member 4 isofor...
ABCC3                 0.239   ATP-binding cassette, sub-family C, member 3 isoform ...
ABCC2                 0.230   ATP-binding cassette, sub-family C (CFTR/MRP), member...
ABCC1                 0.229   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC6                 0.201   ATP-binding cassette, sub-family C, member 6 isofor...
LOC100292715          0.201   PREDICTED: hypothetical protein 
ABCC10                0.201   ATP-binding cassette, sub-family C, member 10 
ABCC8                 0.200   ATP-binding cassette, sub-family C, member 8 
ABCC9                 0.198   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.195   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.195   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC1                 0.194   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.186   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.168   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.140   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC4                 0.135   ATP-binding cassette, sub-family C, member 4 isofor...
CFTR                  0.094   cystic fibrosis transmembrane conductance regulator ...
ABCB1                 0.072   ATP-binding cassette, subfamily B, member 1 
ABCB11                0.069   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB10                0.047   ATP-binding cassette, sub-family B, member 10 [Homo...
ABCB4                 0.044   ATP-binding cassette, subfamily B, member 4 isoform B...
ABCB4                 0.044   ATP-binding cassette, subfamily B, member 4 isoform C...
ABCB4                 0.044   ATP-binding cassette, subfamily B, member 4 isoform A...
ABCB7                 0.044   ATP-binding cassette, sub-family B, member 7 
ABCB6                 0.044   ATP-binding cassette, sub-family B, member 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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