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Search of human proteins with 4503107
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4503107 cystatin C precursor [Homo sapiens]
(146 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4503107 cystatin C precursor [Homo sapiens] 297 2e-81
gi|4503105 cystatin SA precursor [Homo sapiens] 162 1e-40
gi|4503109 cystatin S precursor [Homo sapiens] 158 2e-39
gi|19882251 cystatin SN precursor [Homo sapiens] 156 5e-39
gi|19882256 cystatin D precursor [Homo sapiens] 145 2e-35
gi|4503113 cystatin M precursor [Homo sapiens] 84 3e-17
gi|4885163 cystatin 8 precursor [Homo sapiens] 78 2e-15
gi|20302139 cystatin F [Homo sapiens] 77 5e-15
gi|19882259 cystatin-like 1 precursor [Homo sapiens] 69 1e-12
gi|19882249 cystatin 11 isoform 1 precursor [Homo sapiens] 67 5e-12
gi|18104940 cystatin 9-like precursor [Homo sapiens] 58 3e-09
gi|4504893 kininogen 1 isoform 2 [Homo sapiens] 53 1e-07
gi|156231037 kininogen 1 isoform 1 [Homo sapiens] 53 1e-07
gi|169214772 PREDICTED: similar to hCG1783157 [Homo sapiens] 42 2e-04
gi|239751973 PREDICTED: hypothetical protein XP_002348052 [Homo ... 40 7e-04
gi|239746455 PREDICTED: hypothetical protein XP_002344215 [Homo ... 40 7e-04
gi|18644732 cystatin 11 isoform 2 precursor [Homo sapiens] 36 0.010
gi|226529477 cystatin 9 precursor [Homo sapiens] 34 0.039
gi|58331240 fetuin B [Homo sapiens] 32 0.15
gi|4885165 cystatin A [Homo sapiens] 31 0.33
gi|62988338 vimentin-type IF-associated coiled-coil protein [Hom... 29 1.2
gi|46255043 retinoic acid receptor responder (tazarotene induced... 28 3.6
gi|46255041 retinoic acid receptor responder (tazarotene induced... 28 3.6
gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens] 27 6.2
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 27 6.2
gi|157909822 pragmin [Homo sapiens] 27 6.2
gi|4503117 cystatin B [Homo sapiens] 27 8.0
gi|7656991 coronin, actin binding protein, 1C isoform 1 [Homo sa... 27 8.0
>gi|4503107 cystatin C precursor [Homo sapiens]
Length = 146
Score = 297 bits (761), Expect = 2e-81
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEY 60
MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEY
Sbjct: 1 MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEY 60
Query: 61 NKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKRK 120
NKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKRK
Sbjct: 61 NKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKRK 120
Query: 121 AFCSFQIYAVPWQGTMTLSKSTCQDA 146
AFCSFQIYAVPWQGTMTLSKSTCQDA
Sbjct: 121 AFCSFQIYAVPWQGTMTLSKSTCQDA 146
>gi|4503105 cystatin SA precursor [Homo sapiens]
Length = 141
Score = 162 bits (409), Expect = 1e-40
Identities = 83/147 (56%), Positives = 104/147 (70%), Gaps = 7/147 (4%)
Query: 1 MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLV-GGPMDASVEEEGVRRALDFAVGE 59
MA PL LLLLA AVALA SP + R++ GG DA + +E V+RAL F + E
Sbjct: 1 MAWPLCTLLLLLATQAVALAWSPQ------EEDRIIEGGIYDADLNDERVQRALHFVISE 54
Query: 60 YNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKR 119
YNKA+ D Y+ R L+V+RAR+QIV GVNYF D+E+GRT CTK+QPNLD C FH+QP L++
Sbjct: 55 YNKATEDEYYRRLLRVLRAREQIVGGVNYFFDIEVGRTICTKSQPNLDTCAFHEQPELQK 114
Query: 120 KAFCSFQIYAVPWQGTMTLSKSTCQDA 146
K CSFQIY VPW+ M+L S CQ+A
Sbjct: 115 KQLCSFQIYEVPWEDRMSLVNSRCQEA 141
>gi|4503109 cystatin S precursor [Homo sapiens]
Length = 141
Score = 158 bits (399), Expect = 2e-39
Identities = 82/147 (55%), Positives = 103/147 (70%), Gaps = 7/147 (4%)
Query: 1 MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLV-GGPMDASVEEEGVRRALDFAVGE 59
MA PL LLL+A LA ALA SS + R++ GG DA + +E V+RAL FA+ E
Sbjct: 1 MARPLCTLLLLMATLAGALA------SSSKEENRIIPGGIYDADLNDEWVQRALHFAISE 54
Query: 60 YNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKR 119
YNKA+ D Y+ R LQV+RAR+Q GVNYF DVE+GRT CTK+QPNLD C FH+QP L++
Sbjct: 55 YNKATEDEYYRRPLQVLRAREQTFGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQK 114
Query: 120 KAFCSFQIYAVPWQGTMTLSKSTCQDA 146
K CSF+IY VPW+ M+L S CQ+A
Sbjct: 115 KQLCSFEIYEVPWEDRMSLVNSRCQEA 141
>gi|19882251 cystatin SN precursor [Homo sapiens]
Length = 141
Score = 156 bits (395), Expect = 5e-39
Identities = 81/147 (55%), Positives = 104/147 (70%), Gaps = 7/147 (4%)
Query: 1 MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLV-GGPMDASVEEEGVRRALDFAVGE 59
MA L LLLLA LAVALA SP + R++ GG +A + +E V+RAL FA+ E
Sbjct: 1 MAQYLSTLLLLLATLAVALAWSPK------EEDRIIPGGIYNADLNDEWVQRALHFAISE 54
Query: 60 YNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKR 119
YNKA+ D Y+ R L+V+RAR+Q V GVNYF DVE+GRT CTK+QPNLD C FH+QP L++
Sbjct: 55 YNKATKDDYYRRPLRVLRARQQTVGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQK 114
Query: 120 KAFCSFQIYAVPWQGTMTLSKSTCQDA 146
K CSF+IY VPW+ +L KS CQ++
Sbjct: 115 KQLCSFEIYEVPWENRRSLVKSRCQES 141
>gi|19882256 cystatin D precursor [Homo sapiens]
Length = 142
Score = 145 bits (365), Expect = 2e-35
Identities = 74/145 (51%), Positives = 97/145 (66%), Gaps = 6/145 (4%)
Query: 1 MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEY 60
M P+ PLLLL L VA+A GS+ + L GG + ++ V+ ALDFA+ EY
Sbjct: 1 MMWPMHTPLLLLTALMVAVA-----GSASAQSRTLAGGIHATDLNDKSVQCALDFAISEY 55
Query: 61 NKASN-DMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKR 119
NK N D Y+SR LQV+ A +QIV GVNY+ +V+ GRTTCTK+QPNLDNCPF+DQP LK
Sbjct: 56 NKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKE 115
Query: 120 KAFCSFQIYAVPWQGTMTLSKSTCQ 144
+ FCSFQI VPW+ +++ C+
Sbjct: 116 EEFCSFQINEVPWEDKISILNYKCR 140
>gi|4503113 cystatin M precursor [Homo sapiens]
Length = 149
Score = 84.3 bits (207), Expect = 3e-17
Identities = 52/143 (36%), Positives = 77/143 (53%), Gaps = 10/143 (6%)
Query: 8 PLLL-LAILAVALAVSPA-AGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEYNKASN 65
PL L LA++A L P A + P + R+VG D S ++ V++A AV YN SN
Sbjct: 7 PLALGLALVAFCLLALPRDARARPQE--RMVGELRDLSPDDPQVQKAAQAAVASYNMGSN 64
Query: 66 DMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQ-----PNLDNCPFHDQPHLKRK 120
+Y+ R +++A+ Q+VAG+ YFL +E+G T C KT+ +L CP + K
Sbjct: 65 SIYYFRDTHIIKAQSQLVAGIKYFLTMEMGSTDCRKTRVTGDHVDLTTCPLAAGAQ-QEK 123
Query: 121 AFCSFQIYAVPWQGTMTLSKSTC 143
C F++ VPWQ + L K C
Sbjct: 124 LRCDFEVLVVPWQNSSQLLKHNC 146
>gi|4885163 cystatin 8 precursor [Homo sapiens]
Length = 142
Score = 78.2 bits (191), Expect = 2e-15
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 39 PMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTT 98
P++AS V++ L FA+ EYNK S D Y ++ ++A+ Q+ + Y +DVE+ R+
Sbjct: 37 PVNAS--NANVKQCLWFAMQEYNKESEDKYVFLVVKTLQAQLQVTNLLEYLIDVEIARSD 94
Query: 99 CTKTQPNLDNCPFHDQPHLKRKAFCSFQIYAVPWQGTMTLSKSTCQDA 146
C K + C + LKRK CSF + A+PW G T+ + C+DA
Sbjct: 95 CRKPLSTNEICAIQENSKLKRKLSCSFLVGALPWNGEFTVMEKKCEDA 142
>gi|20302139 cystatin F [Homo sapiens]
Length = 167
Score = 77.0 bits (188), Expect = 5e-15
Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 5 LRAPLLLLAILAVALAV----SPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEY 60
+RA LLA + L+ SP S G P + GV +A ++V ++
Sbjct: 23 MRAAGTLLAFCCLVLSTTGGPSPDTCSQDLNSRVKPGFPKTIKTNDPGVLQAARYSVEKF 82
Query: 61 NKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQP-NLDNCPFHDQPHLKR 119
N +NDM+ + ++ RA QIV G+ Y L+VE+GRTTC K Q LD+C F LK+
Sbjct: 83 NNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCDFQTNHTLKQ 142
Query: 120 KAFCSFQIYAVPW 132
C +++ VPW
Sbjct: 143 TLSCYSEVWVVPW 155
>gi|19882259 cystatin-like 1 precursor [Homo sapiens]
Length = 145
Score = 69.3 bits (168), Expect = 1e-12
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 3 GPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEYNK 62
G R PLLLL +AL +S G + G + ++ + L+F + YN
Sbjct: 4 GCWRNPLLLL----IALVLSAKLGHF-----QRWEGFQQKLMSKKNMNSTLNFFIQSYNN 54
Query: 63 ASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKRKAF 122
ASND Y R +++R++ Q+ GV Y + V++G T C + + +CP + L++
Sbjct: 55 ASNDTYLYRVQRLIRSQMQLTTGVEYIVTVKIGWTKCKRNDTSNSSCPLQSK-KLRKSLI 113
Query: 123 CSFQIYAVPWQGTMTLSKSTCQDA 146
C IY +PW L ++C +A
Sbjct: 114 CESLIYTMPWINYFQLWNNSCLEA 137
>gi|19882249 cystatin 11 isoform 1 precursor [Homo sapiens]
Length = 138
Score = 67.0 bits (162), Expect = 5e-12
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 9/143 (6%)
Query: 1 MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEY 60
MA P +A LLLAIL +A+ A + + E + +L + +Y
Sbjct: 2 MAEPWQALQLLLAILLTLMALPYQARK------KTFLSVHEVMAVENYAKDSLQWITDQY 55
Query: 61 NKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKRK 120
NK S+D YH R +V++ ++Q+ + Y L+VE+ TTC K P NC + L ++
Sbjct: 56 NKESDDKYHFRIFRVLKVQRQVTDHLEYHLNVEMQWTTCQK--PETTNC-VPQERELHKQ 112
Query: 121 AFCSFQIYAVPWQGTMTLSKSTC 143
C F ++AVPW + +C
Sbjct: 113 VNCFFSVFAVPWFEQYKILNKSC 135
>gi|18104940 cystatin 9-like precursor [Homo sapiens]
Length = 147
Score = 57.8 bits (138), Expect = 3e-09
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 53 LDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYF-LDVELGRTTCTKTQPNLDNCPF 111
++FAV +N+ S D Y R ++ + K+ V F +++ LGRT C K + ++DNC F
Sbjct: 51 VEFAVHTFNQQSKDYYAYRLGHILNSWKEQVESKTVFSMELLLGRTRCGKFEDDIDNCHF 110
Query: 112 HDQPHLKRKAFCSFQIYAVPWQGTMTLSKSTC 143
+ L C F I PW +L TC
Sbjct: 111 QESTELNNTFTCFFTISTRPWMTQFSLLNKTC 142
>gi|4504893 kininogen 1 isoform 2 [Homo sapiens]
Length = 427
Score = 52.8 bits (125), Expect = 1e-07
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 29 PGK----PPR--LVGGPMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQI 82
PGK PP VG P D + L + + N +N ++ + V +AR Q+
Sbjct: 252 PGKDFVQPPTKICVGCPRDIPTNSPELEETLTHTITKLNAENNATFYFKIDNVKKARVQV 311
Query: 83 VAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKRKAFCSFQIYAVPWQ 133
VAG YF+D TTC+K + N + + L + C+ ++Y VPW+
Sbjct: 312 VAGKKYFIDFVARETTCSK-ESNEELTESCETKKLGQSLDCNAEVYVVPWE 361
Score = 30.4 bits (67), Expect = 0.56
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 64 SNDMYHSRAL---QVVRARKQIVAGVNYFLDVELGRTTCTK 101
+N+ HS +V RA++Q+VAG+N+ + + +T C+K
Sbjct: 168 NNNTQHSSLFMLNEVKRAQRQVVAGLNFRITYSIVQTNCSK 208
>gi|156231037 kininogen 1 isoform 1 [Homo sapiens]
Length = 644
Score = 52.8 bits (125), Expect = 1e-07
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 29 PGK----PPR--LVGGPMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQI 82
PGK PP VG P D + L + + N +N ++ + V +AR Q+
Sbjct: 252 PGKDFVQPPTKICVGCPRDIPTNSPELEETLTHTITKLNAENNATFYFKIDNVKKARVQV 311
Query: 83 VAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKRKAFCSFQIYAVPWQ 133
VAG YF+D TTC+K + N + + L + C+ ++Y VPW+
Sbjct: 312 VAGKKYFIDFVARETTCSK-ESNEELTESCETKKLGQSLDCNAEVYVVPWE 361
Score = 30.4 bits (67), Expect = 0.56
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 64 SNDMYHSRAL---QVVRARKQIVAGVNYFLDVELGRTTCTK 101
+N+ HS +V RA++Q+VAG+N+ + + +T C+K
Sbjct: 168 NNNTQHSSLFMLNEVKRAQRQVVAGLNFRITYSIVQTNCSK 208
>gi|169214772 PREDICTED: similar to hCG1783157 [Homo sapiens]
Length = 538
Score = 42.0 bits (97), Expect = 2e-04
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 18/87 (20%)
Query: 52 ALDFAVGEYNKASNDMYHSRALQVVRARKQIVA------------------GVNYFLDVE 93
+++FAV ++N+ + + Y R L+V RA++++ GV D+E
Sbjct: 396 SMEFAVAQFNEDNMEEYTHRLLEVQRAQQKVSGSHFVHSQNSLHRLNSSKPGVMAAGDLE 455
Query: 94 LGRTTCTKTQPNLDNCPFHDQPHLKRK 120
+G T C K ++DNCP + K+K
Sbjct: 456 MGLTICKKYDEDIDNCPLQEGSAEKKK 482
>gi|239751973 PREDICTED: hypothetical protein XP_002348052 [Homo
sapiens]
Length = 537
Score = 40.0 bits (92), Expect = 7e-04
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 22/89 (24%)
Query: 52 ALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFL--------------------D 91
+++FAV ++N+ + + Y R L+V RA++++ ++F+ D
Sbjct: 395 SMEFAVAQFNEDNMEEYTHRLLEVQRAQQKVSG--SHFVHSQNSLHRLNSSKPVVMAAGD 452
Query: 92 VELGRTTCTKTQPNLDNCPFHDQPHLKRK 120
+E+G T C K ++DNCP + K+K
Sbjct: 453 LEMGLTICKKYDEDIDNCPLQEGSAEKKK 481
>gi|239746455 PREDICTED: hypothetical protein XP_002344215 [Homo
sapiens]
Length = 537
Score = 40.0 bits (92), Expect = 7e-04
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 22/89 (24%)
Query: 52 ALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFL--------------------D 91
+++FAV ++N+ + + Y R L+V RA++++ ++F+ D
Sbjct: 395 SMEFAVAQFNEDNMEEYTHRLLEVQRAQQKVSG--SHFVHSQNSLHRLNSSKPVVMAAGD 452
Query: 92 VELGRTTCTKTQPNLDNCPFHDQPHLKRK 120
+E+G T C K ++DNCP + K+K
Sbjct: 453 LEMGLTICKKYDEDIDNCPLQEGSAEKKK 481
>gi|18644732 cystatin 11 isoform 2 precursor [Homo sapiens]
Length = 103
Score = 36.2 bits (82), Expect = 0.010
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 1 MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEY 60
MA P +A LLLAIL +A+ A + + E + +L + +Y
Sbjct: 2 MAEPWQALQLLLAILLTLMALPYQARK------KTFLSVHEVMAVENYAKDSLQWITDQY 55
Query: 61 NKASNDMYHSRALQVVRARKQIVAGVNYFLDV 92
NK S+D YH R +V++ ++Q VN F V
Sbjct: 56 NKESDDKYHFRIFRVLKVQRQ---QVNCFFSV 84
>gi|226529477 cystatin 9 precursor [Homo sapiens]
Length = 159
Score = 34.3 bits (77), Expect = 0.039
Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 53 LDFAVGEYNKASNDMYHSRALQVVRARKQIVAG------VNYFLDVELGRTTCTKTQPNL 106
++FA+ +N S + + R L+V+ + ++ + + ++++L +T C K + ++
Sbjct: 51 VEFALNTFNVQSKEEHAYRLLRVLSSWREDSMDRKWRGKMVFSMNLQLRQTVCRKFEDDI 110
Query: 107 DNCPFHDQPHL 117
DNCPF + L
Sbjct: 111 DNCPFQESLEL 121
>gi|58331240 fetuin B [Homo sapiens]
Length = 382
Score = 32.3 bits (72), Expect = 0.15
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 39 PMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTT 98
P D+S + V A ++ +YN + +S +V RA Q V G +YF++ + +
Sbjct: 159 PTDSSNHQ--VLEAATESLAKYNNENTSKQYS-LFKVTRASSQWVVGPSYFVEYLIKESP 215
Query: 99 CTKTQ 103
CTK+Q
Sbjct: 216 CTKSQ 220
>gi|4885165 cystatin A [Homo sapiens]
Length = 98
Score = 31.2 bits (69), Expect = 0.33
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 37 GGPMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELG 95
GG +A ++ +D + + +N+ Y L+ V+ + Q+VAG NY++ V G
Sbjct: 4 GGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGK--LEAVQYKTQVVAGTNYYIKVRAG 60
>gi|62988338 vimentin-type IF-associated coiled-coil protein [Homo
sapiens]
Length = 169
Score = 29.3 bits (64), Expect = 1.2
Identities = 24/54 (44%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 6 RAPLL-LLAILAVALAVSPAAGSSPG-KPPRLVGGPMDASVEEEGVRRALDFAV 57
R PL LL LA A + P S PG PP G P+D S EE R L AV
Sbjct: 111 RPPLAGLLDALAEAERLGPLPASDPGHPPPGGPGPPLDNSTGEEADRDHLQPAV 164
>gi|46255043 retinoic acid receptor responder (tazarotene induced)
1 isoform 1 [Homo sapiens]
Length = 294
Score = 27.7 bits (60), Expect = 3.6
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 2 AGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEYN 61
+GP R P +LA+ L ++P A + P G P DA V +++A A+ +N
Sbjct: 13 SGP-RGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQQAARAALHFFN 71
Query: 62 KASNDMYHSRALQVVR 77
S R L V+
Sbjct: 72 FRSGSPSALRVLAEVQ 87
>gi|46255041 retinoic acid receptor responder (tazarotene induced)
1 isoform 2 [Homo sapiens]
Length = 228
Score = 27.7 bits (60), Expect = 3.6
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 2 AGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEYN 61
+GP R P +LA+ L ++P A + P G P DA V +++A A+ +N
Sbjct: 13 SGP-RGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQQAARAALHFFN 71
Query: 62 KASNDMYHSRALQVVR 77
S R L V+
Sbjct: 72 FRSGSPSALRVLAEVQ 87
>gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens]
Length = 1247
Score = 26.9 bits (58), Expect = 6.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 18 ALAVSPAAGSSPGKPPR------LVGGPMDASVEEEGVR 50
ALA P +G +PG PP L P + S++E GV+
Sbjct: 1038 ALAPRPLSGQAPGSPPSTRPPPWLSELPENTSLQEHGVK 1076
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 26.9 bits (58), Expect = 6.2
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 19 LAVSPAAGSSPGKPPRLVGGPMDASVE 45
++ P + PP+++GGP+ AS E
Sbjct: 1464 VSAPPGTNAQQNMPPQMMGGPIQASAE 1490
>gi|157909822 pragmin [Homo sapiens]
Length = 1402
Score = 26.9 bits (58), Expect = 6.2
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 17 VALAVSPAAGSSPGKPPRLVGGPMDASVEEEGV 49
VA P AGS P PPRL P + +E+EGV
Sbjct: 43 VAGPPQPRAGSLP-PPPRLPPRPENCRLEDEGV 74
>gi|4503117 cystatin B [Homo sapiens]
Length = 98
Score = 26.6 bits (57), Expect = 8.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 74 QVVRARKQIVAGVNYFLDVELG 95
+ V + Q+VAG NYF+ V +G
Sbjct: 39 KAVSFKSQVVAGTNYFIKVHVG 60
>gi|7656991 coronin, actin binding protein, 1C isoform 1 [Homo
sapiens]
Length = 474
Score = 26.6 bits (57), Expect = 8.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 97 TTCTKTQP--NLDNCPFHDQPHLKRKAFCSFQIYAVPWQGTMTLS 139
T C T P ++D CP +DQ C+ ++ +P G +TLS
Sbjct: 75 TVCGHTGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENG-LTLS 118
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,762,018
Number of Sequences: 37866
Number of extensions: 250028
Number of successful extensions: 980
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 33
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.