Guide to the Human Genome
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Name: RARRES1 Sequence: fasta or formatted (228aa) NCBI GI: 46255041
Description:

retinoic acid receptor responder (tazarotene induced) 1 isoform 2

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [294aa] retinoic acid receptor responder (tazarotene induced) 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         18           2
 C cysteine            1.3          3           1
 D aspartate           3.5          8           2
 E glutamate           4.8         11           1
 F phenylalanine       3.1          7           2
 G glycine             6.1         14           1
 H histidine           2.2          5           1
 I isoleucine          3.1          7           1
 K lysine              5.3         12           3
 L leucine            11.8         27           5
 M methionine          1.8          4           1
 N asparagine          3.1          7           1
 P proline             9.2         21           1
 Q glutamine           7.0         16           2
 R arginine            8.8         20           2
 S serine              6.1         14           2
 T threonine           3.9          9           2
 V valine              6.1         14           2
 W tryptophan          2.2          5           1
 Y tyrosine            2.6          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinoic acid receptor responder (tazarotene induced... 
RARRES1               0.984   retinoic acid receptor responder (tazarotene induced...
LXN                   0.122   latexin 
B4GALNT4              0.029   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
CABP1                 0.023   calcium binding protein 1 isoform 3 
NTN3                  0.023   netrin 3 
COL7A1                0.020   alpha 1 type VII collagen precursor 
MXRA7                 0.020   transmembrane anchor protein 1 isoform 3 
MXRA7                 0.020   transmembrane anchor protein 1 isoform 2 
MXRA7                 0.020   transmembrane anchor protein 1 isoform 1 
COL9A3                0.018   alpha 3 type IX collagen 
NUCB1                 0.018   nucleobindin 1 
SCMH1                 0.018   sex comb on midleg 1 isoform 1 
SCMH1                 0.018   sex comb on midleg 1 isoform 2 
ADAMTS8               0.018   ADAM metallopeptidase with thrombospondin type 1 mo...
MYO15A                0.016   myosin XV 
WASL                  0.016   Wiskott-Aldrich syndrome gene-like protein 
GLT25D1               0.016   glycosyltransferase 25 domain containing 1 
MBNL1                 0.016   muscleblind-like 1 isoform f 
TBC1D9                0.016   TBC1 domain family, member 9 (with GRAM domain) [Ho...
YAP1                  0.016   Yes-associated protein 1, 65kDa isoform 2 
YAP1                  0.016   Yes-associated protein 1, 65kDa isoform 1 
RIMBP3                0.016   DKFZP434H0735 protein 
PAK4                  0.016   p21-activated kinase 4 isoform 1 
PAK4                  0.016   p21-activated kinase 4 isoform 2 
PAK4                  0.016   p21-activated kinase 4 isoform 2 
PAK4                  0.016   p21-activated kinase 4 isoform 1 
PAK4                  0.016   p21-activated kinase 4 isoform 1 
ASTN2                 0.014   astrotactin 2 isoform c 
ASTN2                 0.014   astrotactin 2 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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