Guide to the Human Genome
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Name: CST5 Sequence: fasta or formatted (142aa) NCBI GI: 19882256
Description:

cystatin D precursor

Referenced in:

Protease Inhibitors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         11           2
 C cysteine            3.5          5           1
 D aspartate           4.9          7           1
 E glutamate           4.9          7           3
 F phenylalanine       4.2          6           1
 G glycine             4.2          6           2
 H histidine           1.4          2           1
 I isoleucine          4.9          7           1
 K lysine              7.0         10           1
 L leucine             8.5         12           4
 M methionine          3.5          5           2
 N asparagine          7.0         10           1
 P proline             4.9          7           1
 Q glutamine           5.6          8           2
 R arginine            2.8          4           1
 S serine              6.3          9           1
 T threonine           4.9          7           2
 V valine              7.0         10           1
 W tryptophan          1.4          2           1
 Y tyrosine            4.9          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cystatin D precursor 
CST2                  0.526   cystatin SA precursor 
CST4                  0.515   cystatin S precursor 
CST1                  0.500   cystatin SN precursor 
CST3                  0.444   cystatin C precursor 
CST6                  0.137   cystatin M precursor 
CST8                  0.137   cystatin 8 precursor 
CST7                  0.126   cystatin F 
CSTL1                 0.126   cystatin-like 1 precursor 
CST11                 0.126   cystatin 11 isoform 1 precursor 
CST9L                 0.100   cystatin 9-like precursor 
CST9                  0.056   cystatin 9 precursor 
KNG1                  0.048   kininogen 1 isoform 2 
KNG1                  0.048   kininogen 1 isoform 1 
LOC100131368          0.044   PREDICTED: similar to hCG1783157 
LOC100291521          0.037   PREDICTED: hypothetical protein XP_002348052 
LOC100289308          0.037   PREDICTED: hypothetical protein XP_002344215 
FETUB                 0.019   fetuin B 
LDB3                  0.011   LIM domain binding 3 isoform 4 
LDB3                  0.011   LIM domain binding 3 isoform 2 
C2orf16               0.011   hypothetical protein LOC84226 
NEK5                  0.007   NIMA-related kinase 5 
AGPAT2                0.007   1-acylglycerol-3-phosphate O-acyltransferase 2 isofo...
AGPAT2                0.007   1-acylglycerol-3-phosphate O-acyltransferase 2 isofor...
CPZ                   0.007   carboxypeptidase Z isoform 1 
CHST9                 0.004   GalNAc-4-sulfotransferase 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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