Guide to the Human Genome
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Name: CST3 Sequence: fasta or formatted (146aa) NCBI GI: 4503107
Description:

cystatin C precursor

Referenced in:

Protease Inhibitors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         18           2
 C cysteine            2.7          4           1
 D aspartate           4.8          7           1
 E glutamate           3.4          5           3
 F phenylalanine       3.4          5           1
 G glycine             6.8         10           2
 H histidine           2.1          3           1
 I isoleucine          2.1          3           1
 K lysine              4.8          7           1
 L leucine            10.3         15           4
 M methionine          2.7          4           1
 N asparagine          3.4          5           1
 P proline             7.5         11           2
 Q glutamine           4.8          7           1
 R arginine            6.2          9           2
 S serine              6.2          9           2
 T threonine           4.8          7           2
 V valine              8.2         12           2
 W tryptophan          0.7          1           1
 Y tyrosine            2.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cystatin C precursor 
CST2                  0.504   cystatin SA precursor 
CST4                  0.489   cystatin S precursor 
CST1                  0.482   cystatin SN precursor 
CST5                  0.441   cystatin D precursor 
CST6                  0.217   cystatin M precursor 
CST8                  0.195   cystatin 8 precursor 
CST7                  0.191   cystatin F 
CSTL1                 0.162   cystatin-like 1 precursor 
CST11                 0.154   cystatin 11 isoform 1 precursor 
CST9L                 0.121   cystatin 9-like precursor 
KNG1                  0.103   kininogen 1 isoform 2 
KNG1                  0.103   kininogen 1 isoform 1 
LOC100131368          0.062   PREDICTED: similar to hCG1783157 
LOC100291521          0.055   PREDICTED: hypothetical protein XP_002348052 
LOC100289308          0.055   PREDICTED: hypothetical protein XP_002344215 
CST11                 0.040   cystatin 11 isoform 2 precursor 
CST9                  0.033   cystatin 9 precursor 
FETUB                 0.026   fetuin B 
CSTA                  0.022   cystatin A 
VMAC                  0.015   vimentin-type IF-associated coiled-coil protein [Hom...
RARRES1               0.011   retinoic acid receptor responder (tazarotene induced...
RARRES1               0.011   retinoic acid receptor responder (tazarotene induced...
SASH1                 0.007   SAM and SH3 domain containing 1 
ARID1A                0.007   AT rich interactive domain 1A isoform a 
PRAGMIN               0.007   pragmin 
CSTB                  0.007   cystatin B 
CORO1C                0.007   coronin, actin binding protein, 1C isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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