Guide to the Human Genome
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Name: CSTL1 Sequence: fasta or formatted (145aa) NCBI GI: 19882259
Description:

cystatin-like 1 precursor

Referenced in:

Protease Inhibitors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.8          4           1
 C cysteine            3.4          5           1
 D aspartate           1.4          2           1
 E glutamate           3.4          5           1
 F phenylalanine       3.4          5           2
 G glycine             4.8          7           1
 H histidine           1.4          2           1
 I isoleucine          6.2          9           1
 K lysine              6.9         10           2
 L leucine            13.1         19           4
 M methionine          3.4          5           1
 N asparagine          9.0         13           2
 P proline             2.1          3           1
 Q glutamine           6.2          9           2
 R arginine            6.2          9           1
 S serine              9.0         13           2
 T threonine           5.5          8           2
 V valine              4.1          6           1
 W tryptophan          3.4          5           1
 Y tyrosine            4.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cystatin-like 1 precursor 
CST8                  0.183   cystatin 8 precursor 
CST11                 0.169   cystatin 11 isoform 1 precursor 
CST3                  0.158   cystatin C precursor 
CST2                  0.151   cystatin SA precursor 
CST9L                 0.140   cystatin 9-like precursor 
CST6                  0.140   cystatin M precursor 
CST7                  0.140   cystatin F 
CST4                  0.133   cystatin S precursor 
CST1                  0.133   cystatin SN precursor 
CST5                  0.122   cystatin D precursor 
KNG1                  0.083   kininogen 1 isoform 2 
KNG1                  0.083   kininogen 1 isoform 1 
PARP14                0.018   poly (ADP-ribose) polymerase family, member 14 [Hom...
LOC100131368          0.018   PREDICTED: similar to hCG1783157 
CST11                 0.014   cystatin 11 isoform 2 precursor 
LOC100291521          0.011   PREDICTED: hypothetical protein XP_002348052 
LOC100289308          0.011   PREDICTED: hypothetical protein XP_002344215 
CCDC27                0.007   coiled-coil domain containing 27 
GLRA2                 0.007   glycine receptor, alpha 2 isoform A 
GLRA2                 0.007   glycine receptor, alpha 2 isoform A 
GLRA4                 0.007   glycine receptor, alpha 4 precursor 
FOXR1                 0.007   forkhead box R1 
GLRA2                 0.007   glycine receptor, alpha 2 isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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