Guide to the Human Genome
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Name: CST6 Sequence: fasta or formatted (149aa) NCBI GI: 4503113
Description:

cystatin M precursor

Referenced in:

Protease Inhibitors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         17           2
 C cysteine            3.4          5           1
 D aspartate           6.0          9           2
 E glutamate           3.4          5           1
 F phenylalanine       2.7          4           1
 G glycine             4.7          7           1
 H histidine           2.0          3           1
 I isoleucine          2.7          4           2
 K lysine              4.0          6           1
 L leucine            12.1         18           2
 M methionine          4.0          6           1
 N asparagine          3.4          5           1
 P proline             4.7          7           1
 Q glutamine           7.4         11           2
 R arginine            6.7         10           1
 S serine              6.0          9           2
 T threonine           4.7          7           2
 V valine              7.4         11           2
 W tryptophan          0.7          1           1
 Y tyrosine            2.7          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cystatin M precursor 
CST3                  0.215   cystatin C precursor 
CST1                  0.185   cystatin SN precursor 
CST4                  0.164   cystatin S precursor 
CST2                  0.164   cystatin SA precursor 
CST7                  0.149   cystatin F 
CSTL1                 0.142   cystatin-like 1 precursor 
CST5                  0.135   cystatin D precursor 
KNG1                  0.109   kininogen 1 isoform 2 
KNG1                  0.109   kininogen 1 isoform 1 
CST8                  0.105   cystatin 8 precursor 
CST11                 0.105   cystatin 11 isoform 1 precursor 
CST9L                 0.029   cystatin 9-like precursor 
FETUB                 0.015   fetuin B 
DNAJB11               0.011   DnaJ (Hsp40) homolog, subfamily B, member 11 precurso...
CST11                 0.007   cystatin 11 isoform 2 precursor 
C10orf90              0.007   hypothetical protein LOC118611 
TERT                  0.007   telomerase reverse transcriptase isoform 2 
TERT                  0.007   telomerase reverse transcriptase isoform 1 
GJA4                  0.007   connexin 37 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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