Guide to the Human Genome
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Name: CSTA Sequence: fasta or formatted (98aa) NCBI GI: 4885165
Description:

cystatin A

Referenced in:

Protease Inhibitors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1          5           1
 C cysteine            0.0          0           0
 D aspartate           6.1          6           2
 E glutamate           9.2          9           2
 F phenylalanine       2.0          2           1
 G glycine             8.2          8           2
 H histidine           1.0          1           1
 I isoleucine          4.1          4           1
 K lysine             12.2         12           1
 L leucine             8.2          8           1
 M methionine          2.0          2           1
 N asparagine          5.1          5           1
 P proline             5.1          5           1
 Q glutamine           6.1          6           1
 R arginine            1.0          1           1
 S serine              2.0          2           1
 T threonine           7.1          7           1
 V valine              9.2          9           2
 W tryptophan          0.0          0           0
 Y tyrosine            6.1          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cystatin A 
CSTB                  0.469   cystatin B 
IMPG1                 0.040   interphotoreceptor matrix proteoglycan 1 
CST3                  0.034   cystatin C precursor 
DNAH14                0.029   dynein, axonemal, heavy polypeptide 14 isoform 1 [H...
CST2                  0.029   cystatin SA precursor 
TNXB                  0.023   tenascin XB isoform 1 precursor 
LOC641765             0.011   PREDICTED: similar to hCG1983816 
LOC641765             0.011   PREDICTED: similar to hCG1983816 
LOC641765             0.011   PREDICTED: similar to hCG1983816 
CEP290                0.011   centrosomal protein 290kDa 
FAM84A                0.011   family with sequence similarity 84, member A 
IFT57                 0.011   estrogen-related receptor beta like 1 
PHB2                  0.006   prohibitin 2 isoform 2 
PHB2                  0.006   prohibitin 2 isoform 1 
CACNA1F               0.006   calcium channel, voltage-dependent, L type, alpha 1F...
CCDC18                0.006   sarcoma antigen NY-SAR-41 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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