Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CST9 Sequence: fasta or formatted (159aa) NCBI GI: 226529477
Description:

cystatin 9 precursor

Referenced in:

Protease Inhibitors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7          9           2
 C cysteine            4.4          7           2
 D aspartate           5.0          8           2
 E glutamate           6.3         10           3
 F phenylalanine       5.0          8           1
 G glycine             6.9         11           2
 H histidine           1.3          2           1
 I isoleucine          2.5          4           1
 K lysine              5.7          9           1
 L leucine             9.4         15           3
 M methionine          5.7          9           1
 N asparagine          5.0          8           2
 P proline             3.8          6           1
 Q glutamine           5.7          9           1
 R arginine            6.9         11           2
 S serine              7.5         12           2
 T threonine           3.1          5           1
 V valine              6.3         10           1
 W tryptophan          2.5          4           1
 Y tyrosine            1.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cystatin 9 precursor 
CST9L                 0.276   cystatin 9-like precursor 
LOC100291521          0.101   PREDICTED: hypothetical protein XP_002348052 
LOC100289308          0.097   PREDICTED: hypothetical protein XP_002344215 
LOC100131368          0.094   PREDICTED: similar to hCG1783157 
CST1                  0.071   cystatin SN precursor 
CST2                  0.071   cystatin SA precursor 
CST5                  0.049   cystatin D precursor 
CST4                  0.045   cystatin S precursor 
CST3                  0.029   cystatin C precursor 
SFI1                  0.019   spindle assembly associated Sfi1 homolog isoform a [...
SFI1                  0.019   spindle assembly associated Sfi1 homolog isoform b [...
GAN                   0.010   gigaxonin 
NEURL4                0.010   neuralized homolog 4 isoform 1 
NEURL4                0.010   neuralized homolog 4 isoform 2 
PDE10A                0.010   phosphodiesterase 10A isoform 2 
PDE10A                0.010   phosphodiesterase 10A isoform 1 
SPP2                  0.006   secreted phosphoprotein 2, 24kDa precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press