Guide to the Human Genome
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Name: CST2 Sequence: fasta or formatted (141aa) NCBI GI: 4503105
Description:

cystatin SA precursor

Referenced in:

Protease Inhibitors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         11           1
 C cysteine            3.5          5           1
 D aspartate           5.7          8           1
 E glutamate           9.9         14           2
 F phenylalanine       3.5          5           2
 G glycine             3.5          5           2
 H histidine           1.4          2           1
 I isoleucine          5.7          8           2
 K lysine              2.8          4           2
 L leucine            11.3         16           5
 M methionine          1.4          2           1
 N asparagine          3.5          5           1
 P proline             3.5          5           1
 Q glutamine           7.1         10           1
 R arginine            7.8         11           2
 S serine              4.3          6           1
 T threonine           4.3          6           1
 V valine              6.4          9           1
 W tryptophan          2.1          3           1
 Y tyrosine            4.3          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cystatin SA precursor 
CST4                  0.850   cystatin S precursor 
CST1                  0.835   cystatin SN precursor 
CST5                  0.534   cystatin D precursor 
CST3                  0.515   cystatin C precursor 
CST8                  0.207   cystatin 8 precursor 
CST6                  0.169   cystatin M precursor 
CST11                 0.165   cystatin 11 isoform 1 precursor 
CSTL1                 0.158   cystatin-like 1 precursor 
CST7                  0.154   cystatin F 
CST9L                 0.150   cystatin 9-like precursor 
KNG1                  0.102   kininogen 1 isoform 2 
KNG1                  0.102   kininogen 1 isoform 1 
CST9                  0.083   cystatin 9 precursor 
LOC100131368          0.079   PREDICTED: similar to hCG1783157 
LOC100289308          0.071   PREDICTED: hypothetical protein XP_002344215 
LOC100291521          0.068   PREDICTED: hypothetical protein XP_002348052 
CST11                 0.053   cystatin 11 isoform 2 precursor 
FETUB                 0.045   fetuin B 
CSTA                  0.019   cystatin A 
NF1                   0.011   neurofibromin isoform 1 
NF1                   0.011   neurofibromin isoform 2 
SLCO5A1               0.004   solute carrier organic anion transporter family, me...
SLCO5A1               0.004   solute carrier organic anion transporter family, me...
RAI14                 0.004   retinoic acid induced 14 isoform d 
RAI14                 0.004   retinoic acid induced 14 isoform c 
RAI14                 0.004   retinoic acid induced 14 isoform b 
RAI14                 0.004   retinoic acid induced 14 isoform a 
RAI14                 0.004   retinoic acid induced 14 isoform a 
RAI14                 0.004   retinoic acid induced 14 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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