Guide to the Human Genome
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Name: CST8 Sequence: fasta or formatted (142aa) NCBI GI: 4885163
Description:

cystatin 8 precursor

Referenced in:

Protease Inhibitors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         10           1
 C cysteine            4.2          6           1
 D aspartate           3.5          5           1
 E glutamate           7.7         11           1
 F phenylalanine       2.8          4           1
 G glycine             2.1          3           1
 H histidine           0.0          0           0
 I isoleucine          4.2          6           1
 K lysine             10.6         15           2
 L leucine            14.1         20           2
 M methionine          2.1          3           1
 N asparagine          6.3          9           1
 P proline             4.2          6           1
 Q glutamine           4.2          6           1
 R arginine            4.9          7           1
 S serine              5.6          8           1
 T threonine           4.2          6           1
 V valine              7.7         11           2
 W tryptophan          2.1          3           1
 Y tyrosine            2.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cystatin 8 precursor 
CST2                  0.209   cystatin SA precursor 
CST11                 0.209   cystatin 11 isoform 1 precursor 
CST3                  0.202   cystatin C precursor 
CST1                  0.198   cystatin SN precursor 
CSTL1                 0.194   cystatin-like 1 precursor 
CST4                  0.190   cystatin S precursor 
CST5                  0.141   cystatin D precursor 
CST7                  0.125   cystatin F 
CST6                  0.110   cystatin M precursor 
CST9L                 0.091   cystatin 9-like precursor 
CST11                 0.053   cystatin 11 isoform 2 precursor 
KNG1                  0.049   kininogen 1 isoform 2 
KNG1                  0.049   kininogen 1 isoform 1 
ARL6                  0.015   ADP-ribosylation factor-like 6 
ARL6                  0.015   ADP-ribosylation factor-like 6 
LOC100131368          0.015   PREDICTED: similar to hCG1783157 
LOC100291521          0.015   PREDICTED: hypothetical protein XP_002348052 
LOC100289308          0.015   PREDICTED: hypothetical protein XP_002344215 
FETUB                 0.011   fetuin B 
IL3RA                 0.008   interleukin 3 receptor, alpha precursor 
KIAA1210              0.008   hypothetical protein LOC57481 
LONRF1                0.008   LON peptidase N-terminal domain and ring finger 1 [H...
USP40                 0.008   ubiquitin thioesterase 40 
IFIT5                 0.008   interferon-induced protein with tetratricopeptide rep...
ANGPTL7               0.008   angiopoietin-like 7 
USP50                 0.008   ubiquitin specific protease 50 
PPM1D                 0.004   protein phosphatase 1D 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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