Guide to the Human Genome
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Name: RNF43 Sequence: fasta or formatted (783aa) NCBI GI: 56711322
Description:

ring finger protein 43

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         62           3
 C cysteine            3.3         26           1
 D aspartate           3.6         28           3
 E glutamate           5.6         44           3
 F phenylalanine       2.2         17           1
 G glycine             7.0         55           2
 H histidine           4.5         35           3
 I isoleucine          3.1         24           2
 K lysine              2.2         17           2
 L leucine             8.6         67           2
 M methionine          1.3         10           1
 N asparagine          1.5         12           1
 P proline            12.3         96           2
 Q glutamine           5.9         46           2
 R arginine            7.5         59           2
 S serine             10.9         85           3
 T threonine           3.8         30           1
 V valine              5.0         39           2
 W tryptophan          1.8         14           1
 Y tyrosine            2.2         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 43 
ZNRF3                 0.135   zinc and ring finger 3 
RNF128                0.036   ring finger protein 128 isoform 1 
RNF215                0.034   ring finger protein 215 
RNF128                0.030   ring finger protein 128 isoform 2 
RNF167                0.030   ring finger protein 167 
RNF130                0.027   ring finger protein 130 
RNF150                0.026   ring finger protein 150 
ZNRF4                 0.025   zinc and ring finger 4 
RNF13                 0.024   ring finger protein 13 
RNF13                 0.024   ring finger protein 13 
RNF149                0.024   ring finger protein 149 
RNF44                 0.023   ring finger protein 44 
RNF38                 0.023   ring finger protein 38 isoform 2 
RNF38                 0.023   ring finger protein 38 isoform 2 
RNF38                 0.023   ring finger protein 38 isoform 3 
RNF38                 0.023   ring finger protein 38 isoform 2 
RNF38                 0.023   ring finger protein 38 isoform 1 
RNF133                0.022   ring finger protein 133 
RNF6                  0.022   ring finger protein 6 
RLIM                  0.022   ring finger protein, LIM domain interacting 
RLIM                  0.022   ring finger protein, LIM domain interacting 
RNF6                  0.022   ring finger protein 6 
RNF6                  0.022   ring finger protein 6 
POLR2A                0.021   DNA-directed RNA polymerase II A 
RNF148                0.021   ring finger protein 148 
RNF115                0.020   Rabring 7 
RNF165                0.020   ring finger protein 165 
RNF126                0.020   ring finger protein 126 
RNF122                0.019   ring finger protein 122 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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