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Search of human proteins with 41281895
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41281895 LIM homeobox transcription factor 1, alpha isoform
b [Homo sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41281895 LIM homeobox transcription factor 1, alpha isoform b... 275 8e-75
gi|28893581 LIM homeobox transcription factor 1, alpha isoform a... 275 8e-75
gi|75677381 LIM homeobox transcription factor 1, alpha isoform c... 212 8e-56
gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens] 142 8e-35
gi|148922920 DENN/MADD domain containing 4B [Homo sapiens] 36 0.008
gi|189491748 ataxin 1 [Homo sapiens] 34 0.030
gi|51479158 ataxin 1 [Homo sapiens] 34 0.030
gi|40807477 retinoic acid induced 1 [Homo sapiens] 34 0.030
gi|169234663 tumor protein p63 isoform 5 [Homo sapiens] 33 0.051
gi|169234661 tumor protein p63 isoform 4 [Homo sapiens] 33 0.051
gi|169234657 tumor protein p63 isoform 2 [Homo sapiens] 33 0.051
gi|31543818 tumor protein p63 isoform 1 [Homo sapiens] 33 0.051
gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens] 33 0.067
gi|10863899 numb homolog (Drosophila)-like [Homo sapiens] 32 0.11
gi|119943102 CREB binding protein isoform b [Homo sapiens] 32 0.19
gi|119943104 CREB binding protein isoform a [Homo sapiens] 32 0.19
gi|40354197 THAP domain containing 11 [Homo sapiens] 32 0.19
gi|31543535 R3H domain containing 1 [Homo sapiens] 31 0.25
gi|162951884 R3H domain containing 2 [Homo sapiens] 31 0.25
gi|239754229 PREDICTED: hypothetical protein [Homo sapiens] 30 0.43
gi|55750053 atrophin-1 [Homo sapiens] 30 0.57
gi|55750041 atrophin-1 [Homo sapiens] 30 0.57
gi|21536485 HIR histone cell cycle regulation defective homolog ... 30 0.57
gi|38158015 mastermind-like 3 [Homo sapiens] 30 0.57
gi|39812378 RAN binding protein 9 [Homo sapiens] 30 0.74
gi|239748761 PREDICTED: hypothetical protein XP_002346789 [Homo ... 30 0.74
gi|239742806 PREDICTED: hypothetical protein XP_002342653 [Homo ... 30 0.74
gi|239741063 PREDICTED: hypothetical protein XP_002342081 [Homo ... 30 0.74
gi|38569491 serine/threonine-protein kinase QSK [Homo sapiens] 30 0.74
gi|38373682 pleckstrin homology domain containing family G membe... 30 0.74
>gi|41281895 LIM homeobox transcription factor 1, alpha isoform b
[Homo sapiens]
Length = 133
Score = 275 bits (703), Expect = 8e-75
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MKKLARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSS 60
MKKLARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSS
Sbjct: 1 MKKLARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSS 60
Query: 61 DPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLATSEAGPLQSRVGNPI 120
DPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLATSEAGPLQSRVGNPI
Sbjct: 61 DPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLATSEAGPLQSRVGNPI 120
Query: 121 DHLYSMQNSYFTS 133
DHLYSMQNSYFTS
Sbjct: 121 DHLYSMQNSYFTS 133
>gi|28893581 LIM homeobox transcription factor 1, alpha isoform a
[Homo sapiens]
Length = 382
Score = 275 bits (703), Expect = 8e-75
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MKKLARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSS 60
MKKLARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSS
Sbjct: 250 MKKLARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSS 309
Query: 61 DPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLATSEAGPLQSRVGNPI 120
DPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLATSEAGPLQSRVGNPI
Sbjct: 310 DPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLATSEAGPLQSRVGNPI 369
Query: 121 DHLYSMQNSYFTS 133
DHLYSMQNSYFTS
Sbjct: 370 DHLYSMQNSYFTS 382
>gi|75677381 LIM homeobox transcription factor 1, alpha isoform c
[Homo sapiens]
Length = 100
Score = 212 bits (539), Expect = 8e-56
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 34 MEGIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDD 93
MEGIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDD
Sbjct: 1 MEGIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDD 60
Query: 94 TSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS 133
TSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS
Sbjct: 61 TSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS 100
>gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens]
Length = 372
Score = 142 bits (358), Expect = 8e-35
Identities = 82/135 (60%), Positives = 100/135 (74%), Gaps = 15/135 (11%)
Query: 1 MKKLARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQ-LLAIEQSVY- 58
MKKLARR QQQQ+ QQN+QRL S+ MEG+M YT L PQQ ++A+EQS Y
Sbjct: 251 MKKLARRHQQQQE-QQNSQRLGQEVL----SSRMEGMMASYTPLAPPQQQIVAMEQSPYG 305
Query: 59 SSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLATSEAGPLQSRVGN 118
SSDPF+QGLTPPQMPG+ + +FHD+DSD TSL++L DCFL +S+ G LQ+RVGN
Sbjct: 306 SSDPFQQGLTPPQMPGN-------DSIFHDIDSD-TSLTSLSDCFLGSSDVGSLQARVGN 357
Query: 119 PIDHLYSMQNSYFTS 133
PID LYSMQ+SYF S
Sbjct: 358 PIDRLYSMQSSYFAS 372
>gi|148922920 DENN/MADD domain containing 4B [Homo sapiens]
Length = 1496
Score = 36.2 bits (82), Expect = 0.008
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 4 LARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSSDPF 63
L RQQQQQQ QQ Q+ Q + AG PY P+P + L Q+ ++
Sbjct: 891 LRERQQQQQQQQQQQQQQQQEQVSAHQEAG-SSQAEPYLERPSPTRPLQ-RQTTWAGRSL 948
Query: 64 RQGLTPP 70
R +PP
Sbjct: 949 RDPASPP 955
>gi|189491748 ataxin 1 [Homo sapiens]
Length = 815
Score = 34.3 bits (77), Expect = 0.030
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 19/78 (24%)
Query: 6 RRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVY-SSDPFR 64
++QQQQQQ QQ Q LS A G++ P + P Q Q V+ SS P
Sbjct: 212 QQQQQQQQQQQQQQHLSRA----------PGLITPGSPPPAQQ-----NQYVHISSSPQN 256
Query: 65 QGLT--PPQMPGDHMHPY 80
G T PP +P H+HP+
Sbjct: 257 TGRTASPPAIP-VHLHPH 273
>gi|51479158 ataxin 1 [Homo sapiens]
Length = 815
Score = 34.3 bits (77), Expect = 0.030
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 19/78 (24%)
Query: 6 RRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVY-SSDPFR 64
++QQQQQQ QQ Q LS A G++ P + P Q Q V+ SS P
Sbjct: 212 QQQQQQQQQQQQQQHLSRA----------PGLITPGSPPPAQQ-----NQYVHISSSPQN 256
Query: 65 QGLT--PPQMPGDHMHPY 80
G T PP +P H+HP+
Sbjct: 257 TGRTASPPAIP-VHLHPH 273
>gi|40807477 retinoic acid induced 1 [Homo sapiens]
Length = 1906
Score = 34.3 bits (77), Expect = 0.030
Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 22/101 (21%)
Query: 6 RRQQQQQQDQQNTQRLSS-------------AQTNGGGSAGMEGIMNPYTALPTPQQLLA 52
++QQQQQQ QQ Q L S A+ G G +G P A+ TP+Q
Sbjct: 278 QQQQQQQQQQQQQQALQSRHHAQETLHYQNLAKYQHYGQQG-QGYCQPDAAVRTPEQYYQ 336
Query: 53 IEQSVYSSDPFRQ-GLTP-------PQMPGDHMHPYGAEPL 85
S P R G +P P MP PY +PL
Sbjct: 337 TFSPSSSHSPARSVGRSPSYSSTPSPLMPNLENFPYSQQPL 377
>gi|169234663 tumor protein p63 isoform 5 [Homo sapiens]
Length = 461
Score = 33.5 bits (75), Expect = 0.051
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 7 RQQQQQQDQQNTQRLSSAQ--TNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSSDPFR 64
RQQQQQQ Q Q+ +S Q ++ G S+ MN LP+ QL+ +Q R
Sbjct: 342 RQQQQQQHQHLLQKQTSIQSPSSYGNSSPPLNKMNSMNKLPSVSQLINPQQ--------R 393
Query: 65 QGLTPPQMP 73
LTP +P
Sbjct: 394 NALTPTTIP 402
>gi|169234661 tumor protein p63 isoform 4 [Homo sapiens]
Length = 586
Score = 33.5 bits (75), Expect = 0.051
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 7 RQQQQQQDQQNTQRLSSAQ--TNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSSDPFR 64
RQQQQQQ Q Q+ +S Q ++ G S+ MN LP+ QL+ +Q R
Sbjct: 342 RQQQQQQHQHLLQKQTSIQSPSSYGNSSPPLNKMNSMNKLPSVSQLINPQQ--------R 393
Query: 65 QGLTPPQMP 73
LTP +P
Sbjct: 394 NALTPTTIP 402
>gi|169234657 tumor protein p63 isoform 2 [Homo sapiens]
Length = 555
Score = 33.5 bits (75), Expect = 0.051
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 7 RQQQQQQDQQNTQRLSSAQ--TNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSSDPFR 64
RQQQQQQ Q Q+ +S Q ++ G S+ MN LP+ QL+ +Q R
Sbjct: 436 RQQQQQQHQHLLQKQTSIQSPSSYGNSSPPLNKMNSMNKLPSVSQLINPQQ--------R 487
Query: 65 QGLTPPQMP 73
LTP +P
Sbjct: 488 NALTPTTIP 496
>gi|31543818 tumor protein p63 isoform 1 [Homo sapiens]
Length = 680
Score = 33.5 bits (75), Expect = 0.051
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 7 RQQQQQQDQQNTQRLSSAQ--TNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSSDPFR 64
RQQQQQQ Q Q+ +S Q ++ G S+ MN LP+ QL+ +Q R
Sbjct: 436 RQQQQQQHQHLLQKQTSIQSPSSYGNSSPPLNKMNSMNKLPSVSQLINPQQ--------R 487
Query: 65 QGLTPPQMP 73
LTP +P
Sbjct: 488 NALTPTTIP 496
>gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens]
Length = 1834
Score = 33.1 bits (74), Expect = 0.067
Identities = 27/96 (28%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
Query: 16 QNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGD 75
Q+T R S G A ++ P T P S +SD RQG P P
Sbjct: 1289 QHTPRASVGNREGNEVAQKFSVIRPQTPPPQTPSSCLTPVSPGTSDGRRQGHRSPSRPHP 1348
Query: 76 HMHPYGAEPLFHDLDSDDTSLSNLGDCFLATSEAGP 111
HP+ + H + D S FL S GP
Sbjct: 1349 GGHPHSSPLAPHPISGDRAHFSRR---FLKHSPPGP 1381
>gi|10863899 numb homolog (Drosophila)-like [Homo sapiens]
Length = 609
Score = 32.3 bits (72), Expect = 0.11
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 1 MKKLARRQQQQQQDQQNTQRLSSAQTNGGGSA---GMEGIMNPYTALPTPQQLLAIEQSV 57
+ ++A+ QQQQQQ QQ Q+ Q A M + P+ A P + +V
Sbjct: 420 VSQVAKAQQQQQQQQQQQQQQQQQQQQAASVAPVPTMPPALQPFPAPVGPFDAAPAQVAV 479
Query: 58 YSSDPFRQGLTPPQMPG 74
+ P Q P PG
Sbjct: 480 FLPPPHMQPPFVPAYPG 496
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 31.6 bits (70), Expect = 0.19
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 2 KKLARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQ 48
++L ++QQQQQQ QQ Q+ GSAGM G M + PQ
Sbjct: 2157 RQLLQQQQQQQQQQQQQQQQQQ------GSAGMAGGMAGHGQFQQPQ 2197
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 31.6 bits (70), Expect = 0.19
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 2 KKLARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQ 48
++L ++QQQQQQ QQ Q+ GSAGM G M + PQ
Sbjct: 2195 RQLLQQQQQQQQQQQQQQQQQQ------GSAGMAGGMAGHGQFQQPQ 2235
>gi|40354197 THAP domain containing 11 [Homo sapiens]
Length = 314
Score = 31.6 bits (70), Expect = 0.19
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 6 RRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSS 60
++QQQQQQ QQ Q+ Q++ S + P + LL ++ +V SS
Sbjct: 113 QQQQQQQQQQQQQQQQQQQQSSPSASTAQTAQLQPNLVSASAAVLLTLQATVDSS 167
Score = 26.6 bits (57), Expect = 6.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 5 ARRQQQQQQDQQNTQRLSSAQ 25
ARR+QQQQQ QQ Q+ Q
Sbjct: 100 ARRRQQQQQQQQQQQQQQQQQ 120
Score = 26.6 bits (57), Expect = 6.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 6 RRQQQQQQDQQNTQRLSSAQ 25
RRQQQQQQ QQ Q+ Q
Sbjct: 102 RRQQQQQQQQQQQQQQQQQQ 121
>gi|31543535 R3H domain containing 1 [Homo sapiens]
Length = 1099
Score = 31.2 bits (69), Expect = 0.25
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 8 QQQQQQ-----DQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSSDP 62
QQQ Q Q +Q L S Q N G+ ++G++ PYT++PT Q L
Sbjct: 690 QQQNYQGIVGVQQPQSQSLVSGQPNSIGNQ-IQGVVIPYTSVPTYQVSLPQGSQGIPHQT 748
Query: 63 FRQGLTPPQMPGDHMHPYGAEPLFHDL 89
++Q + P P P+++ +
Sbjct: 749 YQQPVMFPNQSNQGSMPTTGMPVYYSV 775
>gi|162951884 R3H domain containing 2 [Homo sapiens]
Length = 976
Score = 31.2 bits (69), Expect = 0.25
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 13 QDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPP 70
Q QN LSS +++ GG M+G++ YT LP+ Q + + PF+Q + P
Sbjct: 578 QQPQNQGLLSSQRSSMGGQ--MQGLVVQYTPLPSYQVPVGSDSQNVVQPPFQQPMLVP 633
>gi|239754229 PREDICTED: hypothetical protein [Homo sapiens]
Length = 513
Score = 30.4 bits (67), Expect = 0.43
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 7 RQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTP------QQLLAIEQSVYS- 59
R++ Q + SS G G+ +NP+ LP P L+++ S++S
Sbjct: 242 REEDQDDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLPPPPGRNGLNLLVSVVASIFSM 301
Query: 60 --SDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLA 105
+ P TPP + + PLF D+ + S+ LA
Sbjct: 302 LANSPLESRFTPPLLARGRLLIPLFRPLFFDVPAGPCSVGEAASGLLA 349
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 30.0 bits (66), Expect = 0.57
Identities = 39/151 (25%), Positives = 53/151 (35%), Gaps = 39/151 (25%)
Query: 7 RQQQQQQDQQNTQRLSSAQTNG---------------GGSAGME---------GIMNPY- 41
+QQQQQQ QQ Q+ Q +G GGS+ G + PY
Sbjct: 484 QQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYP 543
Query: 42 ---TALPTPQQLLAIEQ----------SVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHD 88
LP P ++ Q S SS QG P P P GA F
Sbjct: 544 PGPAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPP 603
Query: 89 LDSDDTSLSNLGDCFLATSEAGPLQSRVGNP 119
+ + TS + L +AT + P + +P
Sbjct: 604 VPTVTTSSATL-STVIATVASSPAGYKTASP 633
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 30.0 bits (66), Expect = 0.57
Identities = 39/151 (25%), Positives = 53/151 (35%), Gaps = 39/151 (25%)
Query: 7 RQQQQQQDQQNTQRLSSAQTNG---------------GGSAGME---------GIMNPY- 41
+QQQQQQ QQ Q+ Q +G GGS+ G + PY
Sbjct: 484 QQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYP 543
Query: 42 ---TALPTPQQLLAIEQ----------SVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHD 88
LP P ++ Q S SS QG P P P GA F
Sbjct: 544 PGPAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPP 603
Query: 89 LDSDDTSLSNLGDCFLATSEAGPLQSRVGNP 119
+ + TS + L +AT + P + +P
Sbjct: 604 VPTVTTSSATL-STVIATVASSPAGYKTASP 633
>gi|21536485 HIR histone cell cycle regulation defective homolog A
[Homo sapiens]
Length = 1017
Score = 30.0 bits (66), Expect = 0.57
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 1 MKKLARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSS 60
M K RRQQQQQ DQ+ S+A G + + G++N + + LL + ++
Sbjct: 401 MLKYQRRQQQQQLDQK-----SAATREMGSATSVAGVVNGESLEDIRKNLLKKQVETRTA 455
Query: 61 DPFRQGLTP 69
D R+ +TP
Sbjct: 456 DG-RRRITP 463
>gi|38158015 mastermind-like 3 [Homo sapiens]
Length = 1133
Score = 30.0 bits (66), Expect = 0.57
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 21/94 (22%)
Query: 6 RRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPT---PQQLLAIEQSVYSSDP 62
++QQQQQQ QQ Q+ S QT+ G +PY A T P + Q+ + +P
Sbjct: 491 QQQQQQQQQQQQQQQQHSNQTSNWSPLGPPS--SPYGAAFTAEKPNSPMMYPQAFNNQNP 548
Query: 63 FRQGLTPPQ------------MPGDHMHPYGAEP 84
+ PP +P +HM+ +P
Sbjct: 549 ----IVPPMANNLQKTTMNNYLPQNHMNMINQQP 578
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 29.6 bits (65), Expect = 0.74
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 6/124 (4%)
Query: 4 LARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSSDPF 63
++R QQ + + +NG G G +N + + E V SS
Sbjct: 547 MSRSQQVNNFTSNDVDMETDHYSNGVGETSSNGFLNGSSKHDHEMEDCDTEMEVDSSQLR 606
Query: 64 RQGLTPPQMPGDHMHPYG------AEPLFHDLDSDDTSLSNLGDCFLATSEAGPLQSRVG 117
RQ Q + M +G +E L D + + L D F + + P S VG
Sbjct: 607 RQLCGGSQAAIERMIHFGRELQAMSEQLRRDCGKNTANKKMLKDAFSLLAYSDPWNSPVG 666
Query: 118 NPID 121
N +D
Sbjct: 667 NQLD 670
>gi|239748761 PREDICTED: hypothetical protein XP_002346789 [Homo
sapiens]
Length = 513
Score = 29.6 bits (65), Expect = 0.74
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 7 RQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTP------QQLLAIEQSVYS- 59
R++ Q + SS G G+ +NP+ LP P L+++ S++S
Sbjct: 242 REEDQDDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLPPPPGRNGLNLLVSVVASIFSM 301
Query: 60 --SDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLA 105
+ P TPP + + PLF D+ + S+ LA
Sbjct: 302 LANSPLESRSTPPLLARGRLLIPLFRPLFFDVPAGPCSVGEAASGLLA 349
>gi|239742806 PREDICTED: hypothetical protein XP_002342653 [Homo
sapiens]
Length = 513
Score = 29.6 bits (65), Expect = 0.74
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 7 RQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTP------QQLLAIEQSVYS- 59
R++ Q + SS G G+ +NP+ LP P L+++ S++S
Sbjct: 242 REEDQDDPGDVKKGKSSLHITSGVFPGLAVPLNPWLPLPPPPGRNGLNLLVSVVASIFSM 301
Query: 60 --SDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLA 105
+ P TPP + + PLF D+ + S+ LA
Sbjct: 302 LANSPLESRSTPPLLARGRLLIPLFRPLFFDVPAGPCSVGEAASGLLA 349
>gi|239741063 PREDICTED: hypothetical protein XP_002342081 [Homo
sapiens]
Length = 170
Score = 29.6 bits (65), Expect = 0.74
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 22 SSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPG 74
++A NG S + ++NP T P P L S P R GL P PG
Sbjct: 53 AAAPQNGSRSVAEKHLLNPVTPSPCPAPLAPTS----FSPPRRPGLPTPPRPG 101
>gi|38569491 serine/threonine-protein kinase QSK [Homo sapiens]
Length = 1263
Score = 29.6 bits (65), Expect = 0.74
Identities = 37/131 (28%), Positives = 47/131 (35%), Gaps = 25/131 (19%)
Query: 6 RRQQQQQQDQQNTQRL----------SSAQTNGGGSAGMEGIM-----NPYTALPTPQQL 50
R+QQQQQQ QQ Q L S A + GG S + + Y +PQ L
Sbjct: 945 RQQQQQQQQQQEYQELFRHMNQGDAGSLAPSLGGQSMTERQALSYQNADSYHHHTSPQHL 1004
Query: 51 L------AIEQSVYSSDPFRQGLTPPQMPGDHMHP----YGAEPLFHDLDSDDTSLSNLG 100
L + Q+ + P P M + M GA+ F D S T
Sbjct: 1005 LQIRAQECVSQASSPTPPHGYAHQPALMHSESMEEDCSCEGAKDGFQDSKSSSTLTKGCH 1064
Query: 101 DCFLATSEAGP 111
D L S GP
Sbjct: 1065 DSPLLLSTGGP 1075
>gi|38373682 pleckstrin homology domain containing family G member 5
isoform a [Homo sapiens]
Length = 1006
Score = 29.6 bits (65), Expect = 0.74
Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 15/134 (11%)
Query: 1 MKKLARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSS 60
++ L + +Q+++++ + + +G +A IM + P Q +S
Sbjct: 701 LQSLEEEEDEQEEEEEEEEEEEEGEDSGTSAASSPTIMRKSSGSPDSQHC--------AS 752
Query: 61 DPFRQGLTPPQM-PGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLATSEAGPLQSRVGNP 119
D + L + PGD + + SD+TSLS TSE PL P
Sbjct: 753 DGSTETLAMVVVEPGDTLSSPEFDSGPFSSQSDETSLSTTASSATPTSELLPL-----GP 807
Query: 120 ID-HLYSMQNSYFT 132
+D SM ++Y T
Sbjct: 808 VDGRSCSMDSAYGT 821
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,632,276
Number of Sequences: 37866
Number of extensions: 262978
Number of successful extensions: 2059
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1128
Number of HSP's gapped (non-prelim): 581
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.