Guide to the Human Genome
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Name: LOC100290489 Sequence: fasta or formatted (513aa) NCBI GI: 239748761
Description:

PREDICTED: hypothetical protein XP_002346789

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         57           2
 C cysteine            3.3         17           1
 D aspartate           3.9         20           2
 E glutamate           3.7         19           2
 F phenylalanine       3.9         20           2
 G glycine            10.5         54           2
 H histidine           0.8          4           1
 I isoleucine          0.8          4           1
 K lysine              1.8          9           2
 L leucine            12.9         66           2
 M methionine          1.0          5           1
 N asparagine          1.8          9           1
 P proline             8.4         43           4
 Q glutamine           1.8          9           1
 R arginine            6.0         31           2
 S serine             16.6         85           3
 T threonine           3.1         16           2
 V valine              7.0         36           2
 W tryptophan          1.6          8           1
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346789 
LOC100288758          1.000   PREDICTED: hypothetical protein XP_002342653 
LOC100293256          0.997   PREDICTED: hypothetical protein 
LOC100133915          0.024   PREDICTED: hypothetical protein 
ZNF541                0.021   zinc finger protein 541 
NUP214                0.021   nucleoporin 214kDa 
MED1                  0.020   mediator complex subunit 1 
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
TTMA                  0.017   hypothetical protein LOC645369 
NKX6-1                0.016   NK6 transcription factor related, locus 1 
LOC100291071          0.016   PREDICTED: hypothetical protein XP_002346951 
LOC100287198          0.016   PREDICTED: hypothetical protein XP_002342815 
LOC100287198          0.016   PREDICTED: hypothetical protein 
BAT2D1                0.016   HBxAg transactivated protein 2 
TRO                   0.015   trophinin isoform 5 
SRRM2                 0.015   splicing coactivator subunit SRm300 
FLJ22184              0.014   PREDICTED: hypothetical protein LOC80164 
TNRC18                0.014   trinucleotide repeat containing 18 
LOC100293036          0.014   PREDICTED: hypothetical protein 
KRTAP4-6              0.014   PREDICTED: keratin associated protein 4.6 
AGAP2                 0.014   centaurin, gamma 1 isoform PIKE-L 
SRCAP                 0.014   Snf2-related CBP activator protein 
MICALL2               0.013   MICAL-like 2 isoform 1 
CHD9                  0.013   chromodomain helicase DNA binding protein 9 
PRR12                 0.012   proline rich 12 
SYVN1                 0.012   synoviolin 1 isoform a 
LOC729815             0.012   PREDICTED: hypothetical protein 
LOC729815             0.012   PREDICTED: hypothetical protein 
CABP1                 0.012   calcium binding protein 1 isoform 3 
LBXCOR1               0.012   LBXCOR1 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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