Guide to the Human Genome
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Name: DENND4B Sequence: fasta or formatted (1496aa) NCBI GI: 148922920
Description:

DENN/MADD domain containing 4B

Referenced in:

Myc and Related Functions
Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4        125           2
 C cysteine            2.3         35           1
 D aspartate           3.1         46           2
 E glutamate           6.8        101           3
 F phenylalanine       3.0         45           2
 G glycine             7.3        109           2
 H histidine           2.4         36           1
 I isoleucine          2.2         33           2
 K lysine              2.5         38           2
 L leucine            13.4        200           3
 M methionine          1.3         20           1
 N asparagine          1.5         23           1
 P proline            10.7        160           3
 Q glutamine           4.9         73          16
 R arginine            7.0        105           2
 S serine              8.7        130           2
 T threonine           3.9         59           2
 V valine              6.4         95           2
 W tryptophan          1.3         20           1
 Y tyrosine            2.9         43           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DENN/MADD domain containing 4B 
DENND4A               0.336   DENN/MADD domain containing 4A isoform 1 
DENND4A               0.336   DENN/MADD domain containing 4A isoform 2 
DENND4C               0.229   DENN/MADD domain containing 4C 
SBF2                  0.042   SET binding factor 2 
SBF1                  0.034   SET binding factor 1 
DENND5B               0.026   DENN/MADD domain containing 5B 
DENND5A               0.025   RAB6 interacting protein 1 
DENND2A               0.021   DENN/MADD domain containing 2A 
DENND3                0.020   DENN/MADD domain containing 3 
MADD                  0.020   MAP-kinase activating death domain-containing prote...
MADD                  0.020   MAP-kinase activating death domain-containing prote...
MADD                  0.020   MAP-kinase activating death domain-containing prote...
MADD                  0.020   MAP-kinase activating death domain-containing protei...
MADD                  0.020   MAP-kinase activating death domain-containing prote...
MADD                  0.020   MAP-kinase activating death domain-containing prote...
MADD                  0.020   MAP-kinase activating death domain-containing prote...
MADD                  0.020   MAP-kinase activating death domain-containing prote...
MADD                  0.020   MAP-kinase activating death domain-containing prote...
MADD                  0.020   MAP-kinase activating death domain-containing prote...
DENND2C               0.017   DENN/MADD domain containing 2C 
DENND2D               0.017   DENN/MADD domain containing 2D 
DENND1B               0.016   DENN/MADD domain containing 1B isoform 1 
ST5                   0.016   suppression of tumorigenicity 5 isoform 1 
ST5                   0.016   suppression of tumorigenicity 5 isoform 1 
ST5                   0.016   suppression of tumorigenicity 5 isoform 2 
DENND1B               0.015   DENN/MADD domain containing 1B isoform 2 
DENND1A               0.015   DENN/MADD domain containing 1A isoform 2 
DENND1A               0.015   DENN/MADD domain containing 1A isoform 1 
DENND1C               0.012   DENN/MADD domain containing 1C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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