Guide to the Human Genome
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Name: TP63 Sequence: fasta or formatted (680aa) NCBI GI: 31543818
Description:

tumor protein p63 isoform 1

Referenced in:

p53 Pathway

Other entries for this name:
alt prot [555aa] tumor protein p63 isoform 2
alt prot [487aa] tumor protein p63 isoform 3
alt prot [586aa] tumor protein p63 isoform 4
alt prot [461aa] tumor protein p63 isoform 5
alt prot [393aa] tumor protein p63 isoform 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         29           1
 C cysteine            2.4         16           1
 D aspartate           5.1         35           2
 E glutamate           5.4         37           2
 F phenylalanine       3.4         23           1
 G glycine             4.4         30           2
 H histidine           2.8         19           1
 I isoleucine          5.6         38           2
 K lysine              3.7         25           2
 L leucine             6.8         46           2
 M methionine          3.5         24           2
 N asparagine          4.3         29           1
 P proline             8.8         60           4
 Q glutamine           7.5         51           6
 R arginine            5.6         38           2
 S serine             10.4         71           3
 T threonine           7.5         51           2
 V valine              4.3         29           2
 W tryptophan          0.9          6           1
 Y tyrosine            3.4         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor protein p63 isoform 1 
TP63                  0.834   tumor protein p63 isoform 4 
TP63                  0.809   tumor protein p63 isoform 2 
TP63                  0.656   tumor protein p63 isoform 3 
TP63                  0.642   tumor protein p63 isoform 5 
TP63                  0.490   tumor protein p63 isoform 6 
TP73                  0.472   tumor protein p73 isoform a 
TP73                  0.464   tumor protein p73 isoform b 
TP73                  0.374   tumor protein p73 isoform c 
TP73                  0.331   tumor protein p73 isoform d 
TP53                  0.180   tumor protein p53 isoform a 
TP53                  0.180   tumor protein p53 isoform a 
TP53                  0.166   tumor protein p53 isoform b 
TP53                  0.166   tumor protein p53 isoform c 
TP53                  0.153   tumor protein p53 isoform d 
TP53                  0.139   tumor protein p53 isoform f 
TP53                  0.139   tumor protein p53 isoform e 
TBKBP1                0.012   TBK1 binding protein 1 
MLL3                  0.011   myeloid/lymphoid or mixed-lineage leukemia 3 
ENAH                  0.011   enabled homolog isoform a 
ENAH                  0.011   enabled homolog isoform b 
FMN1                  0.009   formin 1 
TULP4                 0.009   tubby like protein 4 isoform 1 
NCOA6                 0.009   nuclear receptor coactivator 6 
MED15                 0.009   mediator complex subunit 15 isoform a 
MED15                 0.009   mediator complex subunit 15 isoform b 
SMARCA2               0.009   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.009   SWI/SNF-related matrix-associated actin-dependent re...
NCOA3                 0.008   nuclear receptor coactivator 3 isoform b 
SRGAP1                0.007   SLIT-ROBO Rho GTPase activating protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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