Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: COL13A1 Sequence: fasta or formatted (705aa) NCBI GI: 22027587
Description:

alpha 1 type XIII collagen isoform 8

Referenced in:

Collagen

Other entries for this name:
alt prot [717aa] alpha 1 type XIII collagen isoform 20
alt prot [717aa] alpha 1 type XIII collagen isoform 1
alt prot [705aa] alpha 1 type XIII collagen isoform 2
alt prot [700aa] alpha 1 type XIII collagen isoform 3
alt prot [698aa] alpha 1 type XIII collagen isoform 4
alt prot [695aa] alpha 1 type XIII collagen isoform 5
alt prot [702aa] alpha 1 type XIII collagen isoform 6
alt prot [703aa] alpha 1 type XIII collagen isoform 7
alt prot [688aa] alpha 1 type XIII collagen isoform 9
alt prot [676aa] alpha 1 type XIII collagen isoform 10
alt prot [686aa] alpha 1 type XIII collagen isoform 11
alt prot [691aa] alpha 1 type XIII collagen isoform 12
alt prot [690aa] alpha 1 type XIII collagen isoform 13
alt prot [664aa] alpha 1 type XIII collagen isoform 14
alt prot [668aa] alpha 1 type XIII collagen isoform 15
alt prot [660aa] alpha 1 type XIII collagen isoform 16
alt prot [657aa] alpha 1 type XIII collagen isoform 17
alt prot [655aa] alpha 1 type XIII collagen isoform 18
alt prot [610aa] alpha 1 type XIII collagen isoform 19
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         49           3
 C cysteine            1.1          8           1
 D aspartate           3.1         22           1
 E glutamate           6.2         44           1
 F phenylalanine       0.9          6           1
 G glycine            25.4        179           3
 H histidine           1.6         11           1
 I isoleucine          2.7         19           2
 K lysine              6.5         46           2
 L leucine             7.4         52           2
 M methionine          1.8         13           1
 N asparagine          1.6         11           1
 P proline            17.0        120           3
 Q glutamine           4.1         29           2
 R arginine            4.8         34           4
 S serine              3.3         23           2
 T threonine           2.4         17           1
 V valine              2.4         17           1
 W tryptophan          0.3          2           1
 Y tyrosine            0.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alpha 1 type XIII collagen isoform 8 
COL13A1               0.994   alpha 1 type XIII collagen isoform 1 
COL13A1               0.989   alpha 1 type XIII collagen isoform 20 
COL13A1               0.972   alpha 1 type XIII collagen isoform 13 
COL13A1               0.971   alpha 1 type XIII collagen isoform 2 
COL13A1               0.971   alpha 1 type XIII collagen isoform 12 
COL13A1               0.969   alpha 1 type XIII collagen isoform 11 
COL13A1               0.966   alpha 1 type XIII collagen isoform 6 
COL13A1               0.965   alpha 1 type XIII collagen isoform 7 
COL13A1               0.963   alpha 1 type XIII collagen isoform 4 
COL13A1               0.962   alpha 1 type XIII collagen isoform 3 
COL13A1               0.957   alpha 1 type XIII collagen isoform 5 
COL13A1               0.943   alpha 1 type XIII collagen isoform 9 
COL13A1               0.935   alpha 1 type XIII collagen isoform 15 
COL13A1               0.929   alpha 1 type XIII collagen isoform 10 
COL13A1               0.906   alpha 1 type XIII collagen isoform 14 
COL13A1               0.895   alpha 1 type XIII collagen isoform 16 
COL13A1               0.888   alpha 1 type XIII collagen isoform 17 
COL13A1               0.887   alpha 1 type XIII collagen isoform 18 
COL13A1               0.831   alpha 1 type XIII collagen isoform 19 
COL5A2                0.290   alpha 2 type V collagen preproprotein 
COL4A5                0.288   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.288   type IV collagen alpha 5 isoform 3 precursor 
COL4A5                0.287   type IV collagen alpha 5 isoform 2 precursor 
COL5A1                0.284   alpha 1 type V collagen preproprotein 
COL1A1                0.281   alpha 1 type I collagen preproprotein 
COL27A1               0.280   collagen, type XXVII, alpha 1 
COL11A1               0.278   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.278   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.278   alpha 1 type XI collagen isoform A preproprotein [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press