| Name: COL13A1 | Sequence: fasta or formatted (705aa) | NCBI GI: 22027587 | |
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Description: alpha 1 type XIII collagen isoform 8
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Referenced in:
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Other entries for this name:
alt prot [717aa] alpha 1 type XIII collagen isoform 20 alt prot [717aa] alpha 1 type XIII collagen isoform 1 alt prot [705aa] alpha 1 type XIII collagen isoform 2 alt prot [700aa] alpha 1 type XIII collagen isoform 3 alt prot [698aa] alpha 1 type XIII collagen isoform 4 alt prot [695aa] alpha 1 type XIII collagen isoform 5 alt prot [702aa] alpha 1 type XIII collagen isoform 6 alt prot [703aa] alpha 1 type XIII collagen isoform 7 alt prot [688aa] alpha 1 type XIII collagen isoform 9 alt prot [676aa] alpha 1 type XIII collagen isoform 10 alt prot [686aa] alpha 1 type XIII collagen isoform 11 alt prot [691aa] alpha 1 type XIII collagen isoform 12 alt prot [690aa] alpha 1 type XIII collagen isoform 13 alt prot [664aa] alpha 1 type XIII collagen isoform 14 alt prot [668aa] alpha 1 type XIII collagen isoform 15 alt prot [660aa] alpha 1 type XIII collagen isoform 16 alt prot [657aa] alpha 1 type XIII collagen isoform 17 alt prot [655aa] alpha 1 type XIII collagen isoform 18 alt prot [610aa] alpha 1 type XIII collagen isoform 19 | |||
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 7.0 49 3 C cysteine 1.1 8 1 D aspartate 3.1 22 1 E glutamate 6.2 44 1 F phenylalanine 0.9 6 1 G glycine 25.4 179 3 H histidine 1.6 11 1 I isoleucine 2.7 19 2 K lysine 6.5 46 2 L leucine 7.4 52 2 M methionine 1.8 13 1 N asparagine 1.6 11 1 P proline 17.0 120 3 Q glutamine 4.1 29 2 R arginine 4.8 34 4 S serine 3.3 23 2 T threonine 2.4 17 1 V valine 2.4 17 1 W tryptophan 0.3 2 1 Y tyrosine 0.4 3 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 alpha 1 type XIII collagen isoform 8 COL13A1 0.994 alpha 1 type XIII collagen isoform 1 COL13A1 0.989 alpha 1 type XIII collagen isoform 20 COL13A1 0.972 alpha 1 type XIII collagen isoform 13 COL13A1 0.971 alpha 1 type XIII collagen isoform 2 COL13A1 0.971 alpha 1 type XIII collagen isoform 12 COL13A1 0.969 alpha 1 type XIII collagen isoform 11 COL13A1 0.966 alpha 1 type XIII collagen isoform 6 COL13A1 0.965 alpha 1 type XIII collagen isoform 7 COL13A1 0.963 alpha 1 type XIII collagen isoform 4 COL13A1 0.962 alpha 1 type XIII collagen isoform 3 COL13A1 0.957 alpha 1 type XIII collagen isoform 5 COL13A1 0.943 alpha 1 type XIII collagen isoform 9 COL13A1 0.935 alpha 1 type XIII collagen isoform 15 COL13A1 0.929 alpha 1 type XIII collagen isoform 10 COL13A1 0.906 alpha 1 type XIII collagen isoform 14 COL13A1 0.895 alpha 1 type XIII collagen isoform 16 COL13A1 0.888 alpha 1 type XIII collagen isoform 17 COL13A1 0.887 alpha 1 type XIII collagen isoform 18 COL13A1 0.831 alpha 1 type XIII collagen isoform 19 COL5A2 0.290 alpha 2 type V collagen preproprotein COL4A5 0.288 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.288 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.287 type IV collagen alpha 5 isoform 2 precursor COL5A1 0.284 alpha 1 type V collagen preproprotein COL1A1 0.281 alpha 1 type I collagen preproprotein COL27A1 0.280 collagen, type XXVII, alpha 1 COL11A1 0.278 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.278 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.278 alpha 1 type XI collagen isoform A preproprotein [Ho...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
