Guide to the Human Genome
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Name: C1QTNF8 Sequence: fasta or formatted (252aa) NCBI GI: 116686136
Description:

C1q and tumor necrosis factor related protein 8

Referenced in:

Complement

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         29           2
 C cysteine            2.0          5           2
 D aspartate           4.8         12           1
 E glutamate           4.0         10           1
 F phenylalanine       3.2          8           1
 G glycine            11.1         28           1
 H histidine           2.8          7           1
 I isoleucine          2.4          6           1
 K lysine              2.4          6           1
 L leucine            11.9         30           4
 M methionine          2.0          5           1
 N asparagine          2.0          5           1
 P proline             7.9         20           2
 Q glutamine           3.2          8           1
 R arginine           10.3         26           2
 S serine              4.0         10           2
 T threonine           2.4          6           1
 V valine              6.7         17           1
 W tryptophan          2.4          6           1
 Y tyrosine            3.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C1q and tumor necrosis factor related protein 8 [Ho... 
C1QTNF6               0.439   C1q and tumor necrosis factor related protein 6 [Hom...
C1QTNF6               0.439   C1q and tumor necrosis factor related protein 6 [Hom...
C1QTNF1               0.415   C1q and tumor necrosis factor related protein 1 isof...
C1QTNF1               0.415   C1q and tumor necrosis factor related protein 1 isof...
C1QTNF1               0.403   C1q and tumor necrosis factor related protein 1 [Hom...
C1QL4                 0.134   complement component 1, q subcomponent-like 4 
C1QTNF4               0.134   C1q and tumor necrosis factor related protein 4 [Ho...
ADIPOQ                0.122   adiponectin precursor 
C1QL1                 0.118   complement component 1, q subcomponent-like 1 
C1QL3                 0.118   complement component 1, q subcomponent-like 3 
C1QA                  0.114   complement component 1, q subcomponent, A chain precu...
C1QTNF9               0.114   C1q and tumor necrosis factor related protein 9 [Hom...
C1QTNF9B              0.108   C1q and tumor necrosis factor related protein 9B [Ho...
C1QC                  0.106   complement component 1, q subcomponent, C chain prec...
C1QC                  0.106   complement component 1, q subcomponent, C chain pre...
C1QTNF2               0.104   C1q and tumor necrosis factor related protein 2 [Hom...
C1QTNF5               0.104   C1q and tumor necrosis factor related protein 5 prec...
C1QTNF3               0.100   C1q and tumor necrosis factor related protein 3 isof...
C1QTNF3               0.100   C1q and tumor necrosis factor related protein 3 isof...
C1QL2                 0.094   complement component 1, q subcomponent-like 2 [Homo...
OTOL1                 0.092   hypothetical protein LOC131149 
COL10A1               0.090   type X collagen alpha 1 precursor 
C1QTNF7               0.088   C1q and tumor necrosis factor related protein 7 isof...
C1QTNF7               0.088   C1q and tumor necrosis factor related protein 7 iso...
C1QTNF7               0.088   C1q and tumor necrosis factor related protein 7 iso...
COL8A2                0.084   collagen, type VIII, alpha 2 
C1QB                  0.074   complement component 1, q subcomponent, B chain prec...
COL8A1                0.074   alpha 1 type VIII collagen precursor 
COL8A1                0.074   alpha 1 type VIII collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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