Guide to the Human Genome
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Name: KRTAP12-4 Sequence: fasta or formatted (112aa) NCBI GI: 38371744
Description:

keratin associated protein 12-4

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4          6           1
 C cysteine           23.2         26           3
 D aspartate           0.0          0           0
 E glutamate           0.9          1           1
 F phenylalanine       1.8          2           1
 G glycine             6.2          7           1
 H histidine           1.8          2           1
 I isoleucine          0.0          0           0
 K lysine              0.9          1           1
 L leucine             4.5          5           2
 M methionine          1.8          2           1
 N asparagine          0.0          0           0
 P proline            16.1         18           2
 Q glutamine           2.7          3           1
 R arginine            1.8          2           1
 S serine             11.6         13           2
 T threonine           8.0          9           1
 V valine              9.8         11           1
 W tryptophan          0.9          1           1
 Y tyrosine            2.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin associated protein 12-4 
KRTAP12-1             0.305   keratin associated protein 12-1 
KRTAP12-2             0.301   keratin associated protein 12-2 
KRTAP10-2             0.272   keratin associated protein 10-2 
KRTAP10-3             0.272   keratin associated protein 10-3 
KRTAP4-12             0.268   keratin associated protein 4-12 
KRTAP10-7             0.268   keratin associated protein 10-7 
KRTAP12-3             0.264   keratin associated protein 12-3 
KRTAP10-12            0.264   keratin associated protein 10-12 
KRTAP4-5              0.264   keratin associated protein 4-5 
KRTAP10-5             0.264   keratin associated protein 10-5 
KRTAP4-8              0.260   PREDICTED: keratin associated protein 4-8 isoform 3...
KRTAP4-8              0.260   PREDICTED: keratin associated protein 4-8 isoform 2...
KRTAP4-8              0.260   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.260   PREDICTED: similar to keratin associated protein 4-...
LOC100134267          0.260   PREDICTED: similar to keratin associated protein 4-...
LOC100134267          0.260   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-8              0.260   PREDICTED: keratin associated protein 4-8 
KRTAP10-8             0.260   keratin associated protein 10-8 
KRTAP10-11            0.256   keratin associated protein 10-11 
KRTAP4-3              0.256   keratin associated protein 4-3 
KRTAP10-9             0.256   keratin associated protein 10-9 
LOC100130599          0.252   PREDICTED: hypothetical protein 
LOC100130599          0.252   PREDICTED: similar to Keratin-associated protein 10...
KRTAP10-1             0.252   keratin associated protein 10-1 
KRTAP4-11             0.252   keratin associated protein 4-11 
KRTAP10-4             0.248   keratin associated protein 10-4 
KRTAP4-4              0.248   keratin associated protein 4.4 
KRTAP10-6             0.244   keratin associated protein 10-6 
KRTAP4-2              0.244   keratin associated protein 4-2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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