Guide to the Human Genome
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Name: KRTAP4-2 Sequence: fasta or formatted (136aa) NCBI GI: 15082228
Description:

keratin associated protein 4-2

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine           35.3         48           2
 D aspartate           0.7          1           1
 E glutamate           0.7          1           1
 F phenylalanine       0.7          1           1
 G glycine             3.7          5           1
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             0.7          1           1
 M methionine          0.7          1           1
 N asparagine          1.5          2           1
 P proline             8.1         11           1
 Q glutamine           7.4         10           1
 R arginine            8.1         11           1
 S serine             14.7         20           2
 T threonine          11.8         16           2
 V valine              5.1          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin associated protein 4-2 
KRTAP4-12             0.924   keratin associated protein 4-12 
KRTAP4-9              0.808   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-9              0.804   keratin associated protein 4-9 
KRTAP4-4              0.773   keratin associated protein 4.4 
KRTAP4-7              0.757   keratin associated protein 4-7 
KRTAP4-7              0.757   PREDICTED: keratin associated protein 4-7 
KRTAP4-5              0.722   keratin associated protein 4-5 
KRTAP4-9              0.713   PREDICTED: keratin associated protein 4-9 isoform 2...
KRTAP4-11             0.703   keratin associated protein 4-11 
KRTAP4-8              0.700   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.700   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-3              0.697   keratin associated protein 4-3 
KRTAP4-8              0.691   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.691   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-8              0.691   PREDICTED: keratin associated protein 4.8 
KRTAP4-8              0.691   keratin associated protein 4.8 
KRTAP4-8              0.675   PREDICTED: keratin associated protein 4-8 
KRTAP4-8              0.666   PREDICTED: keratin associated protein 4-8 isoform 2...
LOC100134267          0.666   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-1              0.574   keratin associated protein 4-1 
LOC728318             0.511   PREDICTED: hypothetical protein 
LOC728318             0.511   PREDICTED: hypothetical protein 
LOC728318             0.508   PREDICTED: hypothetical protein 
KRTAP9-2              0.479   keratin associated protein 9.2 
LOC728341             0.476   PREDICTED: keratin-associated protein 9-2-like 1-li...
KRTAP9-3              0.454   keratin associated protein 9.3 
KRTAP9-9              0.448   keratin associated protein 9-9 
KRTAP9-8              0.445   keratin associated protein 9.8 
KRTAP9-4              0.420   keratin associated protein 9-4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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