Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KRTAP4-8 Sequence: fasta or formatted (195aa) NCBI GI: 239751306
Description:

PREDICTED: keratin associated protein 4-8

Referenced in:

Keratins

Other entries for this name:
alt prot [185aa] keratin associated protein 4.8
alt prot [185aa] PREDICTED: keratin associated protein 4.8
alt prot [220aa] PREDICTED: keratin associated protein 4-8 isoform 1
alt prot [193aa] PREDICTED: keratin associated protein 4-8 isoform 2
alt prot [204aa] PREDICTED: keratin associated protein 4-8 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.5          1           1
 C cysteine           35.4         69           3
 D aspartate           1.0          2           1
 E glutamate           1.0          2           1
 F phenylalanine       0.0          0           0
 G glycine             2.1          4           1
 H histidine           1.5          3           1
 I isoleucine          2.1          4           1
 K lysine              1.0          2           1
 L leucine             0.5          1           1
 M methionine          0.5          1           1
 N asparagine          0.5          1           1
 P proline             9.7         19           1
 Q glutamine           6.7         13           1
 R arginine            6.7         13           1
 S serine             16.4         32           2
 T threonine           6.2         12           2
 V valine              6.7         13           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: keratin associated protein 4-8 
KRTAP4-8              0.935   PREDICTED: keratin associated protein 4-8 isoform 2...
LOC100134267          0.935   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-8              0.933   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.933   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-8              0.933   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.933   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-11             0.918   keratin associated protein 4-11 
KRTAP4-8              0.912   PREDICTED: keratin associated protein 4.8 
KRTAP4-8              0.912   keratin associated protein 4.8 
KRTAP4-9              0.875   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-9              0.871   keratin associated protein 4-9 
KRTAP4-9              0.853   PREDICTED: keratin associated protein 4-9 isoform 2...
KRTAP4-12             0.825   keratin associated protein 4-12 
KRTAP4-5              0.750   keratin associated protein 4-5 
KRTAP4-3              0.647   keratin associated protein 4-3 
KRTAP4-7              0.591   keratin associated protein 4-7 
KRTAP4-7              0.591   PREDICTED: keratin associated protein 4-7 
KRTAP4-4              0.584   keratin associated protein 4.4 
KRTAP4-2              0.461   keratin associated protein 4-2 
LOC728318             0.435   PREDICTED: hypothetical protein 
LOC728318             0.433   PREDICTED: hypothetical protein 
LOC728318             0.433   PREDICTED: hypothetical protein 
KRTAP9-2              0.401   keratin associated protein 9.2 
LOC728341             0.399   PREDICTED: keratin-associated protein 9-2-like 1-li...
KRTAP4-1              0.390   keratin associated protein 4-1 
KRTAP10-11            0.388   keratin associated protein 10-11 
KRTAP10-7             0.375   keratin associated protein 10-7 
KRTAP10-2             0.369   keratin associated protein 10-2 
KRTAP9-3              0.366   keratin associated protein 9.3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press