Guide to the Human Genome
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Name: FAM92B Sequence: fasta or formatted (304aa) NCBI GI: 38348294
Description:

hypothetical protein LOC339145

Referenced in:

Additional Conserved Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         24           2
 C cysteine            1.6          5           1
 D aspartate           5.3         16           1
 E glutamate           6.9         21           2
 F phenylalanine       4.6         14           2
 G glycine             4.3         13           2
 H histidine           3.3         10           1
 I isoleucine          2.3          7           1
 K lysine              7.2         22           2
 L leucine            10.2         31           2
 M methionine          2.3          7           1
 N asparagine          3.3         10           1
 P proline             3.3         10           3
 Q glutamine           9.2         28           2
 R arginine            6.6         20           1
 S serine              5.9         18           2
 T threonine           5.3         16           2
 V valine              7.6         23           2
 W tryptophan          0.3          1           1
 Y tyrosine            2.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC339145 
FAM92A1               0.372   hypothetical protein LOC137392 
TSGA10                0.034   testis specific, 10 
TSGA10                0.034   testis specific, 10 
SMC3                  0.026   structural maintenance of chromosomes 3 
BIN3                  0.024   bridging integrator 3 
KIF3B                 0.024   kinesin family member 3B 
MYO5C                 0.024   myosin VC 
PPP1R12B              0.024   protein phosphatase 1, regulatory (inhibitor) subuni...
PPP1R12B              0.024   protein phosphatase 1, regulatory (inhibitor) subuni...
APOA1                 0.021   apolipoprotein A-I preproprotein 
CCDC41                0.021   NY-REN-58 antigen 
CCDC41                0.021   NY-REN-58 antigen 
GCC2                  0.021   GRIP and coiled-coil domain-containing 2 
CEP290                0.019   centrosomal protein 290kDa 
FAM184B               0.019   hypothetical protein LOC27146 
LAMC1                 0.019   laminin, gamma 1 precursor 
CCDC27                0.019   coiled-coil domain containing 27 
CUX1                  0.017   cut-like homeobox 1 isoform a 
CUX1                  0.017   cut-like homeobox 1 isoform c 
CUX1                  0.017   cut-like homeobox 1 isoform b 
CAGE1                 0.017   cancer antigen 1 
KIAA1529              0.017   hypothetical protein LOC57653 
PACSIN3               0.017   protein kinase C and casein kinase substrate in neur...
CCDC94                0.017   coiled-coil domain containing 94 
KIF5B                 0.017   kinesin family member 5B 
LOC100133758          0.017   PREDICTED: hypothetical protein, partial 
NUMA1                 0.017   nuclear mitotic apparatus protein 1 
CEP110                0.017   centrosomal protein 110kDa 
BAIAP2L1              0.017   BAI1-associated protein 2-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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