Guide to the Human Genome
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Name: MYO5C Sequence: fasta or formatted (1742aa) NCBI GI: 153945715
Description:

myosin VC

Referenced in:

Myosin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         98           2
 C cysteine            1.3         23           1
 D aspartate           4.6         80           2
 E glutamate           9.4        164           3
 F phenylalanine       4.4         77           2
 G glycine             3.7         64           2
 H histidine           2.4         42           1
 I isoleucine          6.0        105           3
 K lysine              8.4        146           2
 L leucine            10.7        186           3
 M methionine          2.8         49           2
 N asparagine          4.9         85           2
 P proline             2.5         44           2
 Q glutamine           6.7        116           3
 R arginine            5.7        100           3
 S serine              6.5        114           3
 T threonine           4.5         78           2
 V valine              5.6         97           3
 W tryptophan          0.7         13           1
 Y tyrosine            3.5         61           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myosin VC 
MYO5A                 0.518   myosin VA isoform 2 
MYO5A                 0.516   myosin VA isoform 1 
MYO5B                 0.475   myosin VB 
MYH7                  0.172   myosin, heavy chain 7, cardiac muscle, beta 
MYH7B                 0.172   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
MYH2                  0.171   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.171   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH13                 0.171   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH6                  0.171   myosin heavy chain 6 
MYH8                  0.171   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH11                 0.170   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.170   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH3                  0.170   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH11                 0.169   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.169   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH1                  0.167   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH4                  0.167   myosin, heavy polypeptide 4, skeletal muscle 
MYH15                 0.165   myosin, heavy polypeptide 15 
MYH9                  0.165   myosin, heavy polypeptide 9, non-muscle 
MYH10                 0.165   myosin, heavy polypeptide 10, non-muscle 
MYO7A                 0.155   myosin VIIA isoform 2 
MYO7A                 0.155   myosin VIIA isoform 3 
MYO7A                 0.155   myosin VIIA isoform 1 
MYO7B                 0.154   myosin VIIB 
MYH14                 0.154   myosin, heavy chain 14 isoform 2 
MYH14                 0.153   myosin, heavy chain 14 isoform 3 
MYO10                 0.153   myosin X 
MYH14                 0.153   myosin, heavy chain 14 isoform 1 
MYO15A                0.139   myosin XV 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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