Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM92A1 Sequence: fasta or formatted (289aa) NCBI GI: 150170658
Description:

hypothetical protein LOC137392

Referenced in:

Additional Conserved Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         27           2
 C cysteine            1.0          3           1
 D aspartate           6.9         20           2
 E glutamate          10.0         29           3
 F phenylalanine       3.5         10           1
 G glycine             2.1          6           1
 H histidine           1.7          5           1
 I isoleucine          4.2         12           1
 K lysine              6.9         20           1
 L leucine             9.7         28           2
 M methionine          2.4          7           2
 N asparagine          5.2         15           2
 P proline             1.7          5           1
 Q glutamine           6.2         18           2
 R arginine            8.7         25           2
 S serine              5.2         15           2
 T threonine           7.3         21           1
 V valine              5.2         15           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.8          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC137392 
FAM92B                0.401   hypothetical protein LOC339145 
SNX2                  0.035   sorting nexin 2 
TPR                   0.035   nuclear pore complex-associated protein TPR 
BIN3                  0.026   bridging integrator 3 
C14orf145             0.026   hypothetical protein LOC145508 
GFAP                  0.022   glial fibrillary acidic protein isoform 2 
GFAP                  0.022   glial fibrillary acidic protein isoform 1 
DSP                   0.022   desmoplakin isoform I 
EVPL                  0.019   envoplakin 
CHMP4C                0.019   chromatin modifying protein 4C 
GOLGB1                0.019   golgi autoantigen, golgin subfamily b, macrogolgin ...
ATAD2                 0.019   ATPase family, AAA domain containing 2 
MYO18A                0.019   myosin 18A isoform b 
LRRC48                0.017   leucine rich repeat containing 48 isoform b 
LRRC48                0.017   leucine rich repeat containing 48 isoform b 
LRRC48                0.017   leucine rich repeat containing 48 isoform a 
LRRC48                0.017   leucine rich repeat containing 48 isoform a 
PIBF1                 0.017   progesterone-induced blocking factor 1 
MLLT4                 0.015   myeloid/lymphoid or mixed-lineage leukemia (trithora...
LCA5                  0.015   Leber congenital amaurosis 5 
LCA5                  0.015   Leber congenital amaurosis 5 
TRAIP                 0.015   TRAF interacting protein 
NIN                   0.015   ninein isoform 4 
NIN                   0.015   ninein isoform 5 
NIN                   0.015   ninein isoform 1 
NIN                   0.015   ninein isoform 2 
CCDC136               0.015   coiled-coil domain containing 136 
CCDC147               0.015   coiled-coil domain containing 147 
MYH10                 0.015   myosin, heavy polypeptide 10, non-muscle 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press