Guide to the Human Genome
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Name: LOC100133758 Sequence: fasta or formatted (436aa) NCBI GI: 169218106
Description:

PREDICTED: hypothetical protein, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.2          1           1
 C cysteine            0.0          0           0
 D aspartate           0.2          1           1
 E glutamate          31.0        135           2
 F phenylalanine       0.0          0           0
 G glycine             7.8         34           1
 H histidine           0.5          2           1
 I isoleucine          0.9          4           1
 K lysine              6.4         28           1
 L leucine             2.1          9           1
 M methionine          7.1         31           1
 N asparagine          0.5          2           1
 P proline             0.7          3           1
 Q glutamine          26.8        117           1
 R arginine            8.3         36           1
 S serine              0.2          1           1
 T threonine           1.1          5           1
 V valine              5.5         24           1
 W tryptophan          0.7          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein, partial 
LOC283685             0.496   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.465   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC440243             0.445   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC727832             0.440   golgi autoantigen, golgin subfamily a-like 
LOC283767             0.433   golgi autoantigen, golgin subfamily a-like 
LOC645202             0.384   PREDICTED: hypothetical protein LOC645202 
LOC400352             0.354   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.354   PREDICTED: similar to Putative golgin subfamily A m...
TCHH                  0.228   trichohyalin 
LOC651807             0.213   PREDICTED: hypothetical protein 
LOC100133220          0.198   PREDICTED: hypothetical protein 
IVL                   0.183   involucrin 
RPGR                  0.182   retinitis pigmentosa GTPase regulator isoform C [Hom...
WDR87                 0.155   NYD-SP11 protein 
GOLGA6C               0.153   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
GOLGA6D               0.151   golgi autoantigen, golgin subfamily a, 6D 
GOLGA6B               0.151   golgi autoantigen, golgin subfamily a, 6B 
LOC100286959          0.148   PREDICTED: hypothetical protein XP_002343921 
ZNF853                0.146   zinc finger protein 853 
CALD1                 0.135   caldesmon 1 isoform 1 
GOLGA6                0.134   golgi autoantigen, golgin subfamily a, 6 
LOC647042             0.133   PREDICTED: hypothetical protein isoform 1 
GIGYF2                0.128   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.128   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.128   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.128   GRB10 interacting GYF protein 2 isoform b 
GOLGA2                0.125   Golgi autoantigen, golgin subfamily a, 2 
CEP250                0.124   centrosomal protein 2 
MYH9                  0.117   myosin, heavy polypeptide 9, non-muscle 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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