Guide to the Human Genome
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Name: CEP290 Sequence: fasta or formatted (2479aa) NCBI GI: 109255234
Description:

centrosomal protein 290kDa

Referenced in:

Centrosome
Coiled-Coil Proteins
Planar Cell Polarity

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4        135           3
 C cysteine            0.5         12           1
 D aspartate           4.8        120           2
 E glutamate          14.9        369           3
 F phenylalanine       1.3         33           2
 G glycine             2.1         53           2
 H histidine           1.7         43           2
 I isoleucine          5.7        142           2
 K lysine             12.4        308           3
 L leucine            13.1        324           2
 M methionine          2.4         59           1
 N asparagine          5.6        138           2
 P proline             1.4         34           2
 Q glutamine           7.7        190           3
 R arginine            5.4        134           2
 S serine              5.7        141           2
 T threonine           4.0         99           3
 V valine              3.9         96           2
 W tryptophan          0.4         10           1
 Y tyrosine            1.6         39           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   centrosomal protein 290kDa 
GOLGB1                0.052   golgi autoantigen, golgin subfamily b, macrogolgin ...
CENPE                 0.051   centromere protein E 
CENPF                 0.046   centromere protein F 
GOLGA4                0.046   golgi autoantigen, golgin subfamily a, 4 
CEP250                0.043   centrosomal protein 2 
AKAP9                 0.042   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.042   A-kinase anchor protein 9 isoform 3 
TPR                   0.036   nuclear pore complex-associated protein TPR 
EEA1                  0.035   early endosome antigen 1, 162kD 
TCHH                  0.034   trichohyalin 
TRIP11                0.034   thyroid hormone receptor interactor 11 
GCC2                  0.033   GRIP and coiled-coil domain-containing 2 
NUMA1                 0.032   nuclear mitotic apparatus protein 1 
MYH9                  0.031   myosin, heavy polypeptide 9, non-muscle 
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
PLEC1                 0.031   plectin 1 isoform 11 
PLEC1                 0.031   plectin 1 isoform 10 
PLEC1                 0.031   plectin 1 isoform 8 
PLEC1                 0.031   plectin 1 isoform 7 
PLEC1                 0.031   plectin 1 isoform 6 
PLEC1                 0.031   plectin 1 isoform 3 
PLEC1                 0.031   plectin 1 isoform 2 
PLEC1                 0.031   plectin 1 isoform 1 
CCDC88A               0.030   coiled-coil domain containing 88A isoform 1 
CCDC88A               0.030   coiled-coil domain containing 88A isoform 2 
MYH10                 0.030   myosin, heavy polypeptide 10, non-muscle 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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