Guide to the Human Genome
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Name: TSGA10 Sequence: fasta or formatted (698aa) NCBI GI: 13376858
Description:

testis specific, 10

Referenced in:

Testes and Sperm

Other entries for this name:
alt mRNA [698aa] testis specific, 10
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         50           1
 C cysteine            1.9         13           1
 D aspartate           5.4         38           2
 E glutamate          13.6         95           3
 F phenylalanine       1.3          9           1
 G glycine             1.4         10           2
 H histidine           2.1         15           2
 I isoleucine          4.4         31           2
 K lysine              8.5         59           3
 L leucine            11.3         79           2
 M methionine          3.7         26           2
 N asparagine          6.2         43           2
 P proline             1.0          7           1
 Q glutamine           6.4         45           1
 R arginine            8.5         59           2
 S serine              7.2         50           2
 T threonine           5.2         36           3
 V valine              3.3         23           2
 W tryptophan          0.1          1           1
 Y tyrosine            1.3          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   testis specific, 10 
TSGA10                1.000   testis specific, 10 
CEP135                0.359   centrosome protein 4 
CENPE                 0.069   centromere protein E 
ERC1                  0.069   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.068   RAB6-interacting protein 2 isoform delta 
EEA1                  0.066   early endosome antigen 1, 162kD 
GOLGB1                0.066   golgi autoantigen, golgin subfamily b, macrogolgin ...
MYH11                 0.066   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.066   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.066   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.066   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CROCC                 0.062   ciliary rootlet coiled-coil 
CCDC88A               0.061   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.060   coiled-coil domain containing 88A isoform 1 
DSP                   0.059   desmoplakin isoform I 
CENPF                 0.059   centromere protein F 
CGNL1                 0.058   cingulin-like 1 
CCDC18                0.057   sarcoma antigen NY-SAR-41 
CLIP1                 0.057   restin isoform b 
MYH9                  0.057   myosin, heavy polypeptide 9, non-muscle 
CEP250                0.057   centrosomal protein 2 
CGN                   0.057   cingulin 
CEP110                0.056   centrosomal protein 110kDa 
CLIP1                 0.056   restin isoform a 
CNTLN                 0.054   centlein isoform 1 
DST                   0.054   dystonin isoform 1e precursor 
RAI14                 0.054   retinoic acid induced 14 isoform d 
RAI14                 0.054   retinoic acid induced 14 isoform c 
RAI14                 0.054   retinoic acid induced 14 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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