Guide to the Human Genome
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Name: SMC3 Sequence: fasta or formatted (1217aa) NCBI GI: 4885399
Description:

structural maintenance of chromosomes 3

Referenced in:

Protein Glycosylation
Spindle, M phase, and Meiosis

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         71           2
 C cysteine            0.6          7           1
 D aspartate           5.8         70           2
 E glutamate          11.8        144           3
 F phenylalanine       3.4         41           2
 G glycine             4.4         54           2
 H histidine           1.6         19           1
 I isoleucine          5.1         62           2
 K lysine             10.4        126           3
 L leucine            10.1        123           2
 M methionine          2.9         35           1
 N asparagine          4.7         57           2
 P proline             1.6         20           1
 Q glutamine           6.9         84           2
 R arginine            7.0         85           2
 S serine              5.9         72           2
 T threonine           4.7         57           3
 V valine              4.6         56           1
 W tryptophan          0.3          4           1
 Y tyrosine            2.5         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   structural maintenance of chromosomes 3 
SMC2                  0.124   structural maintenance of chromosomes 2 
SMC2                  0.124   structural maintenance of chromosomes 2 
SMC2                  0.124   structural maintenance of chromosomes 2 
SMC4                  0.091   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC4                  0.091   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC1A                 0.087   structural maintenance of chromosomes 1A 
SMC1B                 0.071   SMC1 structural maintenance of chromosomes 1-like 2 ...
MYH10                 0.041   myosin, heavy polypeptide 10, non-muscle 
MYH7                  0.040   myosin, heavy chain 7, cardiac muscle, beta 
MYH9                  0.040   myosin, heavy polypeptide 9, non-muscle 
MYH11                 0.039   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.039   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.039   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.039   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH6                  0.039   myosin heavy chain 6 
MYH1                  0.038   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH3                  0.038   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH2                  0.038   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.038   myosin, heavy chain 2, skeletal muscle, adult [Homo...
EEA1                  0.037   early endosome antigen 1, 162kD 
CCDC88A               0.037   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.037   coiled-coil domain containing 88A isoform 1 
MYH8                  0.036   myosin, heavy chain 8, skeletal muscle, perinatal [...
CENPE                 0.035   centromere protein E 
MYH4                  0.035   myosin, heavy polypeptide 4, skeletal muscle 
CENPF                 0.035   centromere protein F 
MYH13                 0.035   myosin, heavy polypeptide 13, skeletal muscle [Homo...
GOLGA4                0.035   golgi autoantigen, golgin subfamily a, 4 
TPR                   0.034   nuclear pore complex-associated protein TPR 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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