Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PACSIN3 Sequence: fasta or formatted (424aa) NCBI GI: 19224660
Description:

protein kinase C and casein kinase substrate in neurons 3

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         45           2
 C cysteine            1.4          6           1
 D aspartate           5.2         22           1
 E glutamate          12.0         51           2
 F phenylalanine       3.1         13           2
 G glycine             7.5         32           2
 H histidine           3.1         13           1
 I isoleucine          1.2          5           1
 K lysine              5.7         24           2
 L leucine             8.0         34           2
 M methionine          1.7          7           1
 N asparagine          0.7          3           1
 P proline             3.8         16           3
 Q glutamine           6.8         29           2
 R arginine            9.2         39           2
 S serine              6.1         26           3
 T threonine           4.7         20           1
 V valine              3.8         16           1
 W tryptophan          2.8         12           2
 Y tyrosine            2.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein kinase C and casein kinase substrate in neur... 
PACSIN2               0.553   protein kinase C and casein kinase substrate in neu...
PACSIN1               0.534   protein kinase C and casein kinase substrate in neur...
PSTPIP1               0.087   proline-serine-threonine phosphatase interacting pro...
PSTPIP2               0.044   proline-serine-threonine phosphatase interacting pr...
MYO1F                 0.041   myosin IF 
LASP1                 0.041   LIM and SH3 protein 1 
NEB                   0.040   nebulin 
FCHO1                 0.038   FCH domain only 1 isoform b 
FCHO1                 0.038   FCH domain only 1 isoform b 
FCHO1                 0.038   FCH domain only 1 isoform a 
NEBL                  0.035   nebulette sarcomeric isoform 
NEBL                  0.035   nebulette non-muscle isoform 
SNX33                 0.035   sorting nexin 33 
SNX18                 0.033   sorting nexin 18 isoform c 
RIMBP3                0.033   DKFZP434H0735 protein 
SNX18                 0.033   sorting nexin 18 isoform a 
SNX18                 0.033   sorting nexin 18 isoform b 
RIMBP3B               0.032   RIMS binding protein 3B 
RIMBP3C               0.032   RIMS binding protein 3C 
ABI2                  0.032   abl interactor 2 
ARHGAP26              0.032   GTPase regulator associated with the focal adhesion...
MYO1E                 0.032   myosin IE 
SH3D19                0.032   SH3 domain containing 19 isoform c 
SH3D19                0.032   SH3 domain containing 19 isoform b 
SH3D19                0.032   SH3 domain containing 19 isoform a 
KIAA1804              0.031   mixed lineage kinase 4 
FCHO2                 0.031   FCH domain only 2 isoform a 
ITSN1                 0.030   intersectin 1 isoform ITSN-s 
ITSN1                 0.030   intersectin 1 isoform ITSN-l 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press