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Search of human proteins with 38158011
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38158011 cell death-inducing DFFA-like effector a isoform 2
[Homo sapiens]
(253 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38158011 cell death-inducing DFFA-like effector a isoform 2 [... 520 e-148
gi|4557465 cell death-inducing DFFA-like effector a isoform 1 [H... 417 e-117
gi|23943904 cell death-inducing DFFA-like effector c [Homo sapiens] 181 5e-46
gi|93102358 cell death-inducing DFFA-like effector b [Homo sapiens] 151 5e-37
gi|47132600 DNA fragmentation factor, 45kDa, alpha polypeptide i... 58 7e-09
gi|4758148 DNA fragmentation factor, 45kDa, alpha polypeptide is... 58 7e-09
gi|4758150 DNA fragmentation factor, 40 kD, beta polypeptide [Ho... 37 0.022
gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens] 33 0.18
gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo sapi... 33 0.18
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 33 0.24
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 33 0.24
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 32 0.41
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 32 0.41
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 32 0.53
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 31 1.2
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 31 1.2
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 31 1.2
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 31 1.2
gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens] 31 1.2
gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens] 31 1.2
gi|13569919 C1q and tumor necrosis factor related protein 3 isof... 30 1.5
gi|62739183 C1q and tumor necrosis factor related protein 3 isof... 30 1.5
gi|62243586 ubiquitin-specific protease 21 [Homo sapiens] 30 1.5
gi|74027267 ubiquitin-specific protease 21 [Homo sapiens] 30 1.5
gi|24234747 interleukin enhancer binding factor 2 [Homo sapiens] 30 1.5
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 30 2.0
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 30 2.0
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 30 2.6
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 30 2.6
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 30 2.6
>gi|38158011 cell death-inducing DFFA-like effector a isoform 2
[Homo sapiens]
Length = 253
Score = 520 bits (1340), Expect = e-148
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MRGDRASGGPGNHNGSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSRPLTFMGSQTKRVL 60
MRGDRASGGPGNHNGSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSRPLTFMGSQTKRVL
Sbjct: 1 MRGDRASGGPGNHNGSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSRPLTFMGSQTKRVL 60
Query: 61 FTPLMHPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDT 120
FTPLMHPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDT
Sbjct: 61 FTPLMHPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDT 120
Query: 121 EEFFQTLGDNTHFMILEKGQKWMPGSQHVPTCSPPKRSGIARVTFDLYRLNPKDFIGCLN 180
EEFFQTLGDNTHFMILEKGQKWMPGSQHVPTCSPPKRSGIARVTFDLYRLNPKDFIGCLN
Sbjct: 121 EEFFQTLGDNTHFMILEKGQKWMPGSQHVPTCSPPKRSGIARVTFDLYRLNPKDFIGCLN 180
Query: 181 VKATMYEMYSVSYDIRCTGLKGLLRSLLRFLSYSAQVTGQFLIYLGTYMLRVLDDKEERP 240
VKATMYEMYSVSYDIRCTGLKGLLRSLLRFLSYSAQVTGQFLIYLGTYMLRVLDDKEERP
Sbjct: 181 VKATMYEMYSVSYDIRCTGLKGLLRSLLRFLSYSAQVTGQFLIYLGTYMLRVLDDKEERP 240
Query: 241 SLRSQAKGRFTCG 253
SLRSQAKGRFTCG
Sbjct: 241 SLRSQAKGRFTCG 253
>gi|4557465 cell death-inducing DFFA-like effector a isoform 1 [Homo
sapiens]
Length = 219
Score = 417 bits (1071), Expect = e-117
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 47 RPLTFMGSQTKRVLFTPLMHPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGL 106
RPLTFMGSQTKRVLFTPLMHPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGL
Sbjct: 13 RPLTFMGSQTKRVLFTPLMHPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGL 72
Query: 107 VTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQKWMPGSQHVPTCSPPKRSGIARVTFD 166
VTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQKWMPGSQHVPTCSPPKRSGIARVTFD
Sbjct: 73 VTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQKWMPGSQHVPTCSPPKRSGIARVTFD 132
Query: 167 LYRLNPKDFIGCLNVKATMYEMYSVSYDIRCTGLKGLLRSLLRFLSYSAQVTGQFLIYLG 226
LYRLNPKDFIGCLNVKATMYEMYSVSYDIRCTGLKGLLRSLLRFLSYSAQVTGQFLIYLG
Sbjct: 133 LYRLNPKDFIGCLNVKATMYEMYSVSYDIRCTGLKGLLRSLLRFLSYSAQVTGQFLIYLG 192
Query: 227 TYMLRVLDDKEERPSLRSQAKGRFTCG 253
TYMLRVLDDKEERPSLRSQAKGRFTCG
Sbjct: 193 TYMLRVLDDKEERPSLRSQAKGRFTCG 219
>gi|23943904 cell death-inducing DFFA-like effector c [Homo sapiens]
Length = 238
Score = 181 bits (459), Expect = 5e-46
Identities = 93/183 (50%), Positives = 125/183 (68%), Gaps = 6/183 (3%)
Query: 62 TPLMHPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTE 121
+P ARP RVS DRS R+G+MA SL++L+ K D L++A LVLEEDGT V+TE
Sbjct: 36 SPKAPRARPCRVSTADRSVRKGIMAYSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETE 95
Query: 122 EFFQTLGDNTHFMILEKGQKWMP----GSQHVPTCS--PPKRSGIARVTFDLYRLNPKDF 175
E+FQ L +T FM+L+KGQKW P G++H + S P K+ +ARVTFDLY+LNP+DF
Sbjct: 96 EYFQALAGDTVFMVLQKGQKWQPPSEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDF 155
Query: 176 IGCLNVKATMYEMYSVSYDIRCTGLKGLLRSLLRFLSYSAQVTGQFLIYLGTYMLRVLDD 235
IGCLNVKAT Y+ YS+SYD+ C G K +++ R+ +S Q TG L+ Y+ ++LD
Sbjct: 156 IGCLNVKATFYDTYSLSYDLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDA 215
Query: 236 KEE 238
EE
Sbjct: 216 TEE 218
>gi|93102358 cell death-inducing DFFA-like effector b [Homo sapiens]
Length = 219
Score = 151 bits (382), Expect = 5e-37
Identities = 87/213 (40%), Positives = 129/213 (60%), Gaps = 11/213 (5%)
Query: 42 PAEPSRPLTFMGSQTKRVLFTPLMHPARPFRVSNHDRSSRRGVMASSLQELISKTLDALV 101
P++ R ++ + S+ R ++T P RPFRV +H R+ R+G+ A++ QEL++K L+ L+
Sbjct: 9 PSDLLRSVSNISSEFGRRVWTSAPPPQRPFRVCDHKRTIRKGLTAATRQELLAKALETLL 68
Query: 102 IATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQKWMPGSQHVPTCS-----PPK 156
+ G++TLVLEEDGT VD+E+FFQ L D+T M+L+ GQ W P V + P
Sbjct: 69 L-NGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPTRSGVLSYGLGRERPKH 127
Query: 157 RSGIARVTFDLYRLNPKDFIGCLNVKATMYEMYSVSYDIRCTGLKGLLRSLLRFLSYSAQ 216
IAR TFD+Y+ NP+D G LNVKAT Y +YS+S D + G K +LR LLR+ S Q
Sbjct: 128 SKDIARFTFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLGPKKVLRELLRWTSTLLQ 187
Query: 217 VTGQFLIYLGTYMLRVLDDKEERPSLRSQAKGR 249
G L+ + + + ++ E+ Q KGR
Sbjct: 188 GLGHMLLGISSTLRHAVEGAEQ-----WQQKGR 215
>gi|47132600 DNA fragmentation factor, 45kDa, alpha polypeptide
isoform 2 [Homo sapiens]
Length = 268
Score = 58.2 bits (139), Expect = 7e-09
Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 75 NHDRSSRRGVMASSLQELISKTLDALVIATGL--VTLVLEEDGTVVDTEEFFQTLGDNTH 132
N+ R + GV AS L++L SK D L I L VTLVL EDGT+VD +++F L NT
Sbjct: 26 NYSRE-QHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTK 84
Query: 133 FMILEKGQKW 142
F+ L +KW
Sbjct: 85 FVALASNEKW 94
>gi|4758148 DNA fragmentation factor, 45kDa, alpha polypeptide
isoform 1 [Homo sapiens]
Length = 331
Score = 58.2 bits (139), Expect = 7e-09
Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 75 NHDRSSRRGVMASSLQELISKTLDALVIATGL--VTLVLEEDGTVVDTEEFFQTLGDNTH 132
N+ R + GV AS L++L SK D L I L VTLVL EDGT+VD +++F L NT
Sbjct: 26 NYSRE-QHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTK 84
Query: 133 FMILEKGQKW 142
F+ L +KW
Sbjct: 85 FVALASNEKW 94
>gi|4758150 DNA fragmentation factor, 40 kD, beta polypeptide [Homo
sapiens]
Length = 338
Score = 36.6 bits (83), Expect = 0.022
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 78 RSSRR-GVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMIL 136
RS R+ GV S QE++ K + L L EDGT + TE++F ++ DN ++L
Sbjct: 14 RSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTEL-TEDYFPSVPDNAELVLL 72
Query: 137 EKGQKW 142
GQ W
Sbjct: 73 TLGQAW 78
>gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens]
Length = 1484
Score = 33.5 bits (75), Expect = 0.18
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 10 PGNHNGSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSRPLTFMGSQ 55
PG R P+ GP+W RG SPR P EP+ F+G Q
Sbjct: 691 PGVEPQDSRRRSPQEGPTWSRGRRSPRA----PGEPTPASFFIGDQ 732
>gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo
sapiens]
Length = 1554
Score = 33.5 bits (75), Expect = 0.18
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 10 PGNHNGSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSRPLTFMGSQ 55
PG R P+ GP+W RG SPR P EP+ F+G Q
Sbjct: 761 PGVEPQDSRRRSPQEGPTWSRGRRSPRA----PGEPTPASFFIGDQ 802
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 33.1 bits (74), Expect = 0.24
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 1 MRGDRASGGPGNHNGSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSRP 48
++GD+ GP G GPR GP G PRG P P EP +P
Sbjct: 187 IKGDQGQAGPPGPPGP---PGPR-GPPGDTGKDGPRGMPGVPGEPGKP 230
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 33.1 bits (74), Expect = 0.24
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 1 MRGDRASGGPGNHNGSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSRP 48
++GD+ GP G GPR GP G PRG P P EP +P
Sbjct: 187 IKGDQGQAGPPGPPGP---PGPR-GPPGDTGKDGPRGMPGVPGEPGKP 230
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 32.3 bits (72), Expect = 0.41
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 9 GPGNHNGSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSRPLTFMGSQTKR 58
GP G+ GP GP + G P G P P E +PL S+T+R
Sbjct: 1537 GPPGPKGAKGSSGPT-GPKGEAGHPGPPGPPGPPGEVIQPLPIQASRTRR 1585
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 32.3 bits (72), Expect = 0.41
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 3 GDRASGGPGNHNGSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSR 47
G+RA G +G R GP G SW+R R GP P+ P+R
Sbjct: 13 GERARAPSGGGSGQAQRPGPGRG-SWRRPPRRQRPGPAAPSPPAR 56
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 32.0 bits (71), Expect = 0.53
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 1 MRGDRASGGPGNHNGSWAREGPR--LGPSWKRGLWSPRGGP 39
++GDR GP +G+ G R GP K GL PRG P
Sbjct: 2136 IKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPP 2176
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 30.8 bits (68), Expect = 1.2
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 9 GPGNHNGSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSRPLTF-MGSQTKR 58
GP G+ GP GP ++G+ P G P P E +PL M +T+R
Sbjct: 1379 GPAGPKGAKGATGPG-GPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRR 1428
Score = 28.1 bits (61), Expect = 7.7
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 1 MRGDRASGGPGNHNGSWAREGP--RLGPSWKRGLWSPRGGPNRPAEPSRP 48
+RGD + G H G GP G RGL P+G P + E P
Sbjct: 1314 LRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIP 1363
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 30.8 bits (68), Expect = 1.2
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 9 GPGNHNGSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSRPLTF-MGSQTKR 58
GP G+ GP GP ++G+ P G P P E +PL M +T+R
Sbjct: 1358 GPAGPKGAKGATGPG-GPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRR 1407
Score = 28.1 bits (61), Expect = 7.7
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 1 MRGDRASGGPGNHNGSWAREGP--RLGPSWKRGLWSPRGGPNRPAEPSRP 48
+RGD + G H G GP G RGL P+G P + E P
Sbjct: 1293 LRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIP 1342
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 30.8 bits (68), Expect = 1.2
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 9 GPGNHNGSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSRPLTF-MGSQTKR 58
GP G+ GP GP ++G+ P G P P E +PL M +T+R
Sbjct: 1465 GPAGPKGAKGATGPG-GPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRR 1514
Score = 28.1 bits (61), Expect = 7.7
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 1 MRGDRASGGPGNHNGSWAREGP--RLGPSWKRGLWSPRGGPNRPAEPSRP 48
+RGD + G H G GP G RGL P+G P + E P
Sbjct: 1400 LRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIP 1449
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 30.8 bits (68), Expect = 1.2
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 2 RGDRASGGPGNHNGSWAREGPR-----LGPSWKRGLWSPRGGPNRPAEPSR 47
+G S GP G+ R GPR G RGL P G RP P +
Sbjct: 1047 QGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRPGRPGQ 1097
Score = 28.5 bits (62), Expect = 5.9
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 13/48 (27%)
Query: 2 RGDRASGGPGNHNGSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSRPL 49
+GD+ S G W +GPR P PRG P P P P+
Sbjct: 1588 KGDKGS------RGDWGLQGPRGPPG-------PRGRPGPPGPPGGPI 1622
>gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens]
Length = 725
Score = 30.8 bits (68), Expect = 1.2
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 4 DRASGGPGNHNGSWA-REGPRLGPSWKRGLWSPRGGPNRPAEPSRPL-TFMGSQTKRVLF 61
+RA GG SW EG GP WSP P P EP+ P T + R
Sbjct: 446 ERAQGGSFRSLRSWLISEGYATGPDDISPDWSPEQCPPEPMEPASPAPTPTSLRAPRTQR 505
Query: 62 TPLMHPA 68
TP PA
Sbjct: 506 TPGRSPA 512
>gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens]
Length = 935
Score = 30.8 bits (68), Expect = 1.2
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 4 DRASGGPGNHNGSWA-REGPRLGPSWKRGLWSPRGGPNRPAEPSRPL-TFMGSQTKRVLF 61
+RA GG SW EG GP WSP P P EP+ P T + R
Sbjct: 446 ERAQGGSFRSLRSWLISEGYATGPDDISPDWSPEQCPPEPMEPASPAPTPTSLRAPRTQR 505
Query: 62 TPLMHPA 68
TP PA
Sbjct: 506 TPGRSPA 512
>gi|13569919 C1q and tumor necrosis factor related protein 3 isoform
a [Homo sapiens]
Length = 246
Score = 30.4 bits (67), Expect = 1.5
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 21/101 (20%)
Query: 3 GDRASGGPGNHNGSWAREGPR--LGPSWKRGLWSPRGGPNRPA-EPSRPLTFMGSQTKRV 59
G+ + G H G+ +G + LGP +RG P+G P P + FM S
Sbjct: 69 GNNGNNGATGHEGAKGEKGDKGDLGPRGERGQHGPKGEKGYPGIPPELQIAFMAS----- 123
Query: 60 LFTPLMHPARPFRVSNHDRSSRRGVMASSLQELISKTLDAL 100
++ H + G++ SS++ I D +
Sbjct: 124 -------------LATHFSNQNSGIIFSSVETNIGNFFDVM 151
>gi|62739183 C1q and tumor necrosis factor related protein 3 isoform
b [Homo sapiens]
Length = 319
Score = 30.4 bits (67), Expect = 1.5
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 21/101 (20%)
Query: 3 GDRASGGPGNHNGSWAREGPR--LGPSWKRGLWSPRGGPNRPA-EPSRPLTFMGSQTKRV 59
G+ + G H G+ +G + LGP +RG P+G P P + FM S
Sbjct: 142 GNNGNNGATGHEGAKGEKGDKGDLGPRGERGQHGPKGEKGYPGIPPELQIAFMAS----- 196
Query: 60 LFTPLMHPARPFRVSNHDRSSRRGVMASSLQELISKTLDAL 100
++ H + G++ SS++ I D +
Sbjct: 197 -------------LATHFSNQNSGIIFSSVETNIGNFFDVM 224
>gi|62243586 ubiquitin-specific protease 21 [Homo sapiens]
Length = 565
Score = 30.4 bits (67), Expect = 1.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 119 DTEEFFQTLGDNTHFMILEKGQKWMPGSQHVPTCSPPKRSG 159
D +EF + L + H I +G++ P + P SPP+R G
Sbjct: 301 DAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGG 341
>gi|74027267 ubiquitin-specific protease 21 [Homo sapiens]
Length = 565
Score = 30.4 bits (67), Expect = 1.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 119 DTEEFFQTLGDNTHFMILEKGQKWMPGSQHVPTCSPPKRSG 159
D +EF + L + H I +G++ P + P SPP+R G
Sbjct: 301 DAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGG 341
>gi|24234747 interleukin enhancer binding factor 2 [Homo sapiens]
Length = 390
Score = 30.4 bits (67), Expect = 1.5
Identities = 41/146 (28%), Positives = 56/146 (38%), Gaps = 32/146 (21%)
Query: 1 MRGDRASGGPGNHNGSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSRPLTFMGSQTKRVL 60
MRGDR G G R G R GP GG RP P P F + +
Sbjct: 1 MRGDRGRGRGG-------RFGSRGGP----------GGGFRPFVPHIPFDFYLCE----M 39
Query: 61 FTPLMHPARPFRVS--------NHDRSSRRGVMAS--SLQELISKTLDALVIATGLVTLV 110
P + PA P S N D + AS SL I+ +D L++A G +
Sbjct: 40 AFPRVKPA-PDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQ 98
Query: 111 LEEDGTVVDTEEFFQTLGDNTHFMIL 136
+EE V ++ T G N +++
Sbjct: 99 IEEVRQVGSYKKGTMTTGHNVADLVV 124
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 30.0 bits (66), Expect = 2.0
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 2 RGDRASGGPGNHNGSWAREGPR-----LGPSWKRGLWSPRG--GPNRPAEPS 46
+GDR GP +GS ++G R +GP G +G GP+ PA P+
Sbjct: 742 KGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPT 793
Score = 29.3 bits (64), Expect = 3.4
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 8 GGPGNHN--GSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSRP 48
GGPG+ G+ GP+ GP+ +RG P G P E RP
Sbjct: 488 GGPGSRGFPGADGVAGPK-GPAGERGSPGPAGPKGSPGEAGRP 529
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 30.0 bits (66), Expect = 2.0
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 1 MRGDRASGGPGNHNGSWAREGPR--LGPSWKRGLWSPRGGPNRPAEPSRP 48
++GDR G GSW GP G + GL P G P RP P
Sbjct: 185 IQGDRGDPGLPGLPGSWGAGGPAGPTGYPGEPGLVGPPGQPGRPGLKGNP 234
Score = 28.9 bits (63), Expect = 4.5
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 2 RGDRASGGPGNHNGSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSRP 48
RGD+ + G G R GP P + RG +G P P P P
Sbjct: 989 RGDKGTPGMQGRRGEPGRYGP---PGFHRGEPGEKGQPGPPGPPGPP 1032
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 29.6 bits (65), Expect = 2.6
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 2 RGDRASGGPGNHNGSWAREG---PR--LGPSWKRGLWSPRGGPNRPAEP 45
RG + GP +G +G PR G + RGL PRG P P +P
Sbjct: 630 RGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQP 678
Score = 28.9 bits (63), Expect = 4.5
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 9 GPGNHNGSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSRPLTFMGSQTKR 58
GP G+ GP G GL P G P P E +PL + S+ R
Sbjct: 1519 GPQGPKGNKGSTGPA-GQKGDSGLPGPPGSPGPPGEVIQPLPILSSKKTR 1567
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 29.6 bits (65), Expect = 2.6
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 2 RGDRASGGPGNHNGSWAREG---PR--LGPSWKRGLWSPRGGPNRPAEP 45
RG + GP +G +G PR G + RGL PRG P P +P
Sbjct: 579 RGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQP 627
Score = 28.9 bits (63), Expect = 4.5
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 9 GPGNHNGSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSRPLTFMGSQTKR 58
GP G+ GP G GL P G P P E +PL + S+ R
Sbjct: 1468 GPQGPKGNKGSTGPA-GQKGDSGLPGPPGSPGPPGEVIQPLPILSSKKTR 1516
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 29.6 bits (65), Expect = 2.6
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 2 RGDRASGGPGNHNGSWAREG---PR--LGPSWKRGLWSPRGGPNRPAEP 45
RG + GP +G +G PR G + RGL PRG P P +P
Sbjct: 618 RGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQP 666
Score = 28.9 bits (63), Expect = 4.5
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 9 GPGNHNGSWAREGPRLGPSWKRGLWSPRGGPNRPAEPSRPLTFMGSQTKR 58
GP G+ GP G GL P G P P E +PL + S+ R
Sbjct: 1507 GPQGPKGNKGSTGPA-GQKGDSGLPGPPGSPGPPGEVIQPLPILSSKKTR 1555
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,557,213
Number of Sequences: 37866
Number of extensions: 498247
Number of successful extensions: 1944
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1845
Number of HSP's gapped (non-prelim): 153
length of query: 253
length of database: 18,247,518
effective HSP length: 100
effective length of query: 153
effective length of database: 14,460,918
effective search space: 2212520454
effective search space used: 2212520454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.