Guide to the Human Genome
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Name: CIDEA Sequence: fasta or formatted (253aa) NCBI GI: 38158011
Description:

cell death-inducing DFFA-like effector a isoform 2

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Other entries for this name:
alt prot [219aa] cell death-inducing DFFA-like effector a isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         11           1
 C cysteine            1.6          4           1
 D aspartate           4.3         11           2
 E glutamate           4.3         11           2
 F phenylalanine       4.3         11           2
 G glycine             9.9         25           2
 H histidine           2.0          5           1
 I isoleucine          2.8          7           1
 K lysine              4.3         11           1
 L leucine            11.1         28           2
 M methionine          3.6          9           1
 N asparagine          2.8          7           1
 P proline             6.7         17           2
 Q glutamine           3.2          8           1
 R arginine            9.5         24           2
 S serine              8.7         22           2
 T threonine           6.7         17           1
 V valine              5.5         14           2
 W tryptophan          1.6          4           1
 Y tyrosine            2.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cell death-inducing DFFA-like effector a isoform 2 [... 
CIDEA                 0.792   cell death-inducing DFFA-like effector a isoform 1 [H...
CIDEC                 0.315   cell death-inducing DFFA-like effector c 
CIDEB                 0.255   cell death-inducing DFFA-like effector b 
DFFA                  0.067   DNA fragmentation factor, 45kDa, alpha polypeptide i...
DFFA                  0.067   DNA fragmentation factor, 45kDa, alpha polypeptide is...
DFFB                  0.024   DNA fragmentation factor, 40 kD, beta polypeptide [Ho...
KIAA0284              0.016   hypothetical protein LOC283638 isoform 2 
KIAA0284              0.016   hypothetical protein LOC283638 isoform 1 
COL25A1               0.016   collagen, type XXV, alpha 1 isoform 1 
COL25A1               0.016   collagen, type XXV, alpha 1 isoform 2 
COL5A1                0.014   alpha 1 type V collagen preproprotein 
LOC284988             0.014   PREDICTED: hypothetical protein 
COL7A1                0.014   alpha 1 type VII collagen precursor 
COL11A2               0.012   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.012   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.012   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL27A1               0.012   collagen, type XXVII, alpha 1 
ARMC5                 0.012   armadillo repeat containing 5 isoform b 
ARMC5                 0.012   armadillo repeat containing 5 isoform a 
C1QTNF3               0.010   C1q and tumor necrosis factor related protein 3 isof...
C1QTNF3               0.010   C1q and tumor necrosis factor related protein 3 isof...
USP21                 0.010   ubiquitin-specific protease 21 
USP21                 0.010   ubiquitin-specific protease 21 
ILF2                  0.010   interleukin enhancer binding factor 2 
COL1A1                0.010   alpha 1 type I collagen preproprotein 
COL4A4                0.010   alpha 4 type IV collagen precursor 
COL11A1               0.010   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.010   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.010   alpha 1 type XI collagen isoform A preproprotein [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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