Guide to the Human Genome
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Name: USP21 Sequence: fasta or formatted (565aa) NCBI GI: 62243586
Description:

ubiquitin-specific protease 21

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt mRNA [565aa] ubiquitin-specific protease 21
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         35           2
 C cysteine            2.7         15           1
 D aspartate           3.9         22           3
 E glutamate           5.3         30           3
 F phenylalanine       4.2         24           1
 G glycine             8.3         47           3
 H histidine           2.7         15           2
 I isoleucine          1.9         11           1
 K lysine              3.9         22           2
 L leucine            11.9         67           3
 M methionine          1.4          8           1
 N asparagine          3.0         17           1
 P proline             9.7         55           3
 Q glutamine           3.4         19           2
 R arginine           10.6         60           2
 S serine              9.2         52           2
 T threonine           3.9         22           2
 V valine              5.1         29           1
 W tryptophan          0.5          3           1
 Y tyrosine            2.1         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin-specific protease 21 
USP21                 1.000   ubiquitin-specific protease 21 
USP2                  0.277   ubiquitin specific peptidase 2 isoform b 
USP2                  0.277   ubiquitin specific peptidase 2 isoform a 
USP8                  0.165   ubiquitin specific peptidase 8 
USP8                  0.165   ubiquitin specific peptidase 8 
USP8                  0.165   ubiquitin specific peptidase 8 
USP3                  0.131   ubiquitin thiolesterase 3 
USP50                 0.101   ubiquitin specific protease 50 
USP22                 0.095   ubiquitin thiolesterase 22 
USP36                 0.093   ubiquitin specific peptidase 36 
USP15                 0.091   ubiquitin specific peptidase 15 
USP4                  0.090   ubiquitin specific protease 4 isoform a 
USP4                  0.090   ubiquitin specific protease 4 isoform b 
USP27X                0.089   X-linked ubiquitin thioesterase 27 
USP19                 0.087   ubiquitin thioesterase 19 
USP42                 0.087   ubiquitin specific peptidase 42 
USP51                 0.084   ubiquitin specific protease 51 
USP33                 0.082   ubiquitin specific protease 33 isoform 3 
LOC100287238          0.082   PREDICTED: hypothetical protein XP_002342474 
USP32                 0.082   ubiquitin specific protease 32 
USP6                  0.081   ubiquitin specific protease 6 
LOC728379             0.081   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
USP46                 0.081   ubiquitin specific peptidase 46 isoform 2 
USP46                 0.081   ubiquitin specific peptidase 46 isoform 1 
LOC100287327          0.081   PREDICTED: hypothetical protein XP_002342475 
LOC728373             0.080   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
LOC100287513          0.080   PREDICTED: hypothetical protein XP_002342480 
LOC728419             0.079   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728405             0.079   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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