Guide to the Human Genome
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Name: CIDEB Sequence: fasta or formatted (219aa) NCBI GI: 93102358
Description:

cell death-inducing DFFA-like effector b

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         11           2
 C cysteine            1.4          3           1
 D aspartate           5.0         11           2
 E glutamate           5.5         12           2
 F phenylalanine       4.1          9           2
 G glycine             7.8         17           1
 H histidine           2.3          5           1
 I isoleucine          1.8          4           1
 K lysine              4.6         10           2
 L leucine            15.5         34           3
 M methionine          1.8          4           1
 N asparagine          2.3          5           1
 P proline             4.1          9           3
 Q glutamine           5.0         11           2
 R arginine            7.8         17           2
 S serine              9.6         21           2
 T threonine           6.4         14           1
 V valine              5.5         12           1
 W tryptophan          1.8          4           1
 Y tyrosine            2.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cell death-inducing DFFA-like effector b 
CIDEC                 0.319   cell death-inducing DFFA-like effector c 
CIDEA                 0.305   cell death-inducing DFFA-like effector a isoform 1 [H...
CIDEA                 0.302   cell death-inducing DFFA-like effector a isoform 2 [...
DFFA                  0.050   DNA fragmentation factor, 45kDa, alpha polypeptide i...
DFFA                  0.050   DNA fragmentation factor, 45kDa, alpha polypeptide is...
DFFB                  0.017   DNA fragmentation factor, 40 kD, beta polypeptide [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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