Guide to the Human Genome
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Name: CIDEA Sequence: fasta or formatted (219aa) NCBI GI: 4557465
Description:

cell death-inducing DFFA-like effector a isoform 1

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Other entries for this name:
alt prot [253aa] cell death-inducing DFFA-like effector a isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         12           2
 C cysteine            1.8          4           1
 D aspartate           5.0         11           2
 E glutamate           4.6         10           2
 F phenylalanine       5.0         11           2
 G glycine             7.3         16           1
 H histidine           1.8          4           1
 I isoleucine          3.7          8           1
 K lysine              4.6         10           1
 L leucine            12.3         27           2
 M methionine          4.1          9           1
 N asparagine          1.8          4           1
 P proline             4.6         10           2
 Q glutamine           3.7          8           1
 R arginine            8.2         18           2
 S serine              7.8         17           2
 T threonine           7.8         17           1
 V valine              6.4         14           2
 W tryptophan          0.5          1           1
 Y tyrosine            3.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cell death-inducing DFFA-like effector a isoform 1 [H... 
CIDEA                 0.947   cell death-inducing DFFA-like effector a isoform 2 [...
CIDEC                 0.377   cell death-inducing DFFA-like effector c 
CIDEB                 0.307   cell death-inducing DFFA-like effector b 
DFFA                  0.080   DNA fragmentation factor, 45kDa, alpha polypeptide i...
DFFA                  0.080   DNA fragmentation factor, 45kDa, alpha polypeptide is...
DFFB                  0.029   DNA fragmentation factor, 40 kD, beta polypeptide [Ho...
USP21                 0.012   ubiquitin-specific protease 21 
USP21                 0.012   ubiquitin-specific protease 21 
LCE6A                 0.007   late cornified envelope 6A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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