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Search of human proteins with 34335270
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34335270 prion protein preproprotein [Homo sapiens]
(253 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122056628 prion protein preproprotein [Homo sapiens] 557 e-159
gi|122056625 prion protein preproprotein [Homo sapiens] 557 e-159
gi|122056623 prion protein preproprotein [Homo sapiens] 557 e-159
gi|34335270 prion protein preproprotein [Homo sapiens] 557 e-159
gi|4506113 prion protein preproprotein [Homo sapiens] 557 e-159
gi|55956899 keratin 9 [Homo sapiens] 62 5e-10
gi|47132620 keratin 2 [Homo sapiens] 57 1e-08
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 57 2e-08
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 57 2e-08
gi|109452587 family with sequence similarity 98, member B isofor... 54 1e-07
gi|56699482 hypothetical protein LOC25940 [Homo sapiens] 53 3e-07
gi|195972866 keratin 10 [Homo sapiens] 52 5e-07
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 52 5e-07
gi|119395750 keratin 1 [Homo sapiens] 51 1e-06
gi|4504733 insulin receptor substrate 4 [Homo sapiens] 51 1e-06
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 49 3e-06
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 49 4e-06
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 49 5e-06
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 48 9e-06
gi|9966841 cell death regulator aven [Homo sapiens] 48 9e-06
gi|73476377 LBXCOR1 homolog [Homo sapiens] 47 2e-05
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 46 3e-05
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 46 4e-05
gi|131412228 keratin 13 isoform b [Homo sapiens] 46 4e-05
gi|131412225 keratin 13 isoform a [Homo sapiens] 46 4e-05
gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens] 46 4e-05
gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a... 45 6e-05
gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b... 45 6e-05
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 45 8e-05
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 45 8e-05
>gi|122056628 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 557 bits (1435), Expect = e-159
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP 60
MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP
Sbjct: 1 MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP 60
Query: 61 HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA 120
HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA
Sbjct: 61 HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA 120
Query: 121 VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV 180
VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV
Sbjct: 121 VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV 180
Query: 181 NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV 240
NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV
Sbjct: 181 NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV 240
Query: 241 ILLISFLIFLIVG 253
ILLISFLIFLIVG
Sbjct: 241 ILLISFLIFLIVG 253
>gi|122056625 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 557 bits (1435), Expect = e-159
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP 60
MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP
Sbjct: 1 MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP 60
Query: 61 HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA 120
HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA
Sbjct: 61 HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA 120
Query: 121 VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV 180
VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV
Sbjct: 121 VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV 180
Query: 181 NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV 240
NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV
Sbjct: 181 NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV 240
Query: 241 ILLISFLIFLIVG 253
ILLISFLIFLIVG
Sbjct: 241 ILLISFLIFLIVG 253
>gi|122056623 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 557 bits (1435), Expect = e-159
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP 60
MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP
Sbjct: 1 MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP 60
Query: 61 HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA 120
HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA
Sbjct: 61 HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA 120
Query: 121 VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV 180
VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV
Sbjct: 121 VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV 180
Query: 181 NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV 240
NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV
Sbjct: 181 NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV 240
Query: 241 ILLISFLIFLIVG 253
ILLISFLIFLIVG
Sbjct: 241 ILLISFLIFLIVG 253
>gi|34335270 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 557 bits (1435), Expect = e-159
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP 60
MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP
Sbjct: 1 MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP 60
Query: 61 HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA 120
HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA
Sbjct: 61 HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA 120
Query: 121 VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV 180
VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV
Sbjct: 121 VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV 180
Query: 181 NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV 240
NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV
Sbjct: 181 NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV 240
Query: 241 ILLISFLIFLIVG 253
ILLISFLIFLIVG
Sbjct: 241 ILLISFLIFLIVG 253
>gi|4506113 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 557 bits (1435), Expect = e-159
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP 60
MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP
Sbjct: 1 MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP 60
Query: 61 HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA 120
HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA
Sbjct: 61 HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA 120
Query: 121 VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV 180
VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV
Sbjct: 121 VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV 180
Query: 181 NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV 240
NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV
Sbjct: 181 NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV 240
Query: 241 ILLISFLIFLIVG 253
ILLISFLIFLIVG
Sbjct: 241 ILLISFLIFLIVG 253
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 62.0 bits (149), Expect = 5e-10
Identities = 40/105 (38%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGG----GGWGQPHGGGWGQPHGGGWGQPHGGGWGQP 84
GG +GG G GS GG+ GG GG G +GGG G H GG G H GG G
Sbjct: 498 GGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGN 557
Query: 85 HGGGWGQGGGTHSQW--NKPSKPKTNMKHMAGAAAAGAVVGGLGG 127
+GGG G GGG+ + S+ + H G+ G G GG
Sbjct: 558 YGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGG 602
Score = 47.0 bits (110), Expect = 2e-05
Identities = 40/108 (37%), Positives = 49/108 (45%), Gaps = 18/108 (16%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQ------PHGGGWGQP--HGGG 80
GG G Y G+GS GG+ GGGG G +GGG G +GGG G GGG
Sbjct: 476 GGRGGSGGSY-GRGSRGGSG-GSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGG 533
Query: 81 WGQPHGGGW-GQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGG 127
+G GGG G GG HS + + G+ + G GG GG
Sbjct: 534 YGGGSGGGHSGGSGGGHS-------GGSGGNYGGGSGSGGGSGGGYGG 574
Score = 46.2 bits (108), Expect = 3e-05
Identities = 29/66 (43%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGG 88
GG GGSR G G G Y GG GGG+G GGG+G +G G+G G G
Sbjct: 87 GGGFGGGSR--GFGGASGGGYSSSGG------FGGGFGGGSGGGFGGGYGSGFGGFGGFG 138
Query: 89 WGQGGG 94
G GGG
Sbjct: 139 GGAGGG 144
Score = 46.2 bits (108), Expect = 3e-05
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQG-GGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGG 87
GG ++GGS G GGN G GGG G +GGG G G G G G+G GG
Sbjct: 539 GGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGG 598
Query: 88 GWGQG 92
+G G
Sbjct: 599 SYGGG 603
Score = 44.3 bits (103), Expect = 1e-04
Identities = 31/78 (39%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGG------------GWGQPHGGGWGQPHGGGWGQP 76
GG + G Y G GS GG GGG G G GG+G GGG G
Sbjct: 64 GGGGSFGYSYGG-GSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGG 122
Query: 77 HGGGWGQPHGGGWGQGGG 94
GGG+G GG G GGG
Sbjct: 123 FGGGYGSGFGGFGGFGGG 140
Score = 43.1 bits (100), Expect = 2e-04
Identities = 32/75 (42%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Query: 29 GGWNTGGS--RY-PGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGG--GWGQPHGGGWG- 82
GG ++GGS Y G GS GG+ GG G G GG G HGG G+G GG +G
Sbjct: 547 GGGHSGGSGGNYGGGSGSGGGS----GGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGG 602
Query: 83 --QPHGGGWGQGGGT 95
+ G G G GGG+
Sbjct: 603 GEEASGSGGGYGGGS 617
Score = 41.2 bits (95), Expect = 9e-04
Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 30 GWNTGGSRYPGQGSPGGNRYPPQGGGGWG---QPHGGGWGQ-------PHGGGWGQP--H 77
G+ G SR G+G G Y GG G G GGG+G GGG+
Sbjct: 52 GYGGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGF 111
Query: 78 GGGWGQPHGGGWGQGGGT 95
GGG+G GGG+G G G+
Sbjct: 112 GGGFGGGSGGGFGGGYGS 129
Score = 41.2 bits (95), Expect = 9e-04
Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 23/98 (23%)
Query: 31 WNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGW-GQPHGGGWGQPHGGGW 89
+ + G+ G G GG+ GG +G+ GG G +GGG G +GGG G G G
Sbjct: 465 FESSGAGKIGLGGRGGS------GGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGG 518
Query: 90 GQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGG 127
GGG+ S G + G GG GG
Sbjct: 519 SYGGGSGS----------------GGGSGGGYGGGSGG 540
Score = 38.1 bits (87), Expect = 0.007
Identities = 36/121 (29%), Positives = 47/121 (38%), Gaps = 19/121 (15%)
Query: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWG------QPHGGG----WGQPHGGGWGQP 76
+ GG GG G +R+ GGGG G +GGG G+ GG +G
Sbjct: 13 RSGGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYS 72
Query: 77 HGGGWGQPHGG------GWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYML 130
+GGG G GG G G GGG+ ++ G G+ G GGY
Sbjct: 73 YGGGSG---GGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGS 129
Query: 131 G 131
G
Sbjct: 130 G 130
Score = 38.1 bits (87), Expect = 0.007
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGG 88
GG +GG G G G+R G G G GG G +GGG GG G G
Sbjct: 560 GGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGG-----GYG 614
Query: 89 WGQGGGTHS 97
G G +HS
Sbjct: 615 GGSGKSSHS 623
Score = 32.7 bits (73), Expect = 0.31
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 45 GGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ-PHGGGWGQGGGTHSQWNKPS 103
G + G G G GG G +G G GG +G GGG+G G G S
Sbjct: 461 GQEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSG--------S 512
Query: 104 KPKTNMKHMAGAAAAGAVVGGLGG 127
+ + + G+ + G GG GG
Sbjct: 513 RGGSGGSYGGGSGSGGGSGGGYGG 536
>gi|47132620 keratin 2 [Homo sapiens]
Length = 639
Score = 57.4 bits (137), Expect = 1e-08
Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGG--WGQPHG 86
GG+++G S Y G G+R G GG G GGG+G G G GGG G G
Sbjct: 530 GGYSSGSSSYGSGGRQSGSR---GGSGGGGSISGGGYGSGGGSGGRYGSGGGSKGGSISG 586
Query: 87 GGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMS 135
GG+G GGG HS ++ + V G G GS+++
Sbjct: 587 GGYGSGGGKHSSGGGSRGGSSSGGGYGSGGGGSSSVKGSSGEAFGSSVT 635
Score = 41.6 bits (96), Expect = 7e-04
Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 19/104 (18%)
Query: 53 GGGGWGQPHGGGW--GQPHGGGWGQPHG-----GGWGQPHGGGWGQGGGTHSQWNKPSKP 105
G GG G GGG+ G G G+ G GG G GGG+G GGG+ ++
Sbjct: 520 GSGGRGSSSGGGYSSGSSSYGSGGRQSGSRGGSGGGGSISGGGYGSGGGSGGRYGSGGGS 579
Query: 106 KTNM-----------KHMAGAAAAGAVVGGLGGYMLGSAMSRPI 138
K KH +G + G G GGY G S +
Sbjct: 580 KGGSISGGGYGSGGGKHSSGGGSRGGSSSG-GGYGSGGGGSSSV 622
Score = 39.7 bits (91), Expect = 0.003
Identities = 27/60 (45%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHG-GGWGQPHGGGWGQPHGG 87
GG+ G S G G GG GGGG+G GG+G P G GG G P G G G GG
Sbjct: 94 GGFGGGSSFGGGSGFSGGGF----GGGGFGGGRFGGFGGPGGVGGLGGPGGFGPGGYPGG 149
Score = 37.4 bits (85), Expect = 0.013
Identities = 33/101 (32%), Positives = 35/101 (34%), Gaps = 19/101 (18%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-- 86
GG G G G GGGG GG G+ G G G GGG G G
Sbjct: 54 GGGGFGSRSLVGLGGTKSISISVAGGGGGFGAAGGFGGRGGGFGGGSSFGGGSGFSGGGF 113
Query: 87 GGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGG 127
GG G GGG + P VGGLGG
Sbjct: 114 GGGGFGGGRFGGFGGPGG-----------------VGGLGG 137
Score = 37.4 bits (85), Expect = 0.013
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-- 86
GG+ G + G+G G GG G+ GGG+G GGG+G GG+G P G
Sbjct: 81 GGFGAAGG-FGGRGGGFGGGSSFGGGSGFS---GGGFG---GGGFGGGRFGGFGGPGGVG 133
Query: 87 -----GGWGQGG 93
GG+G GG
Sbjct: 134 GLGGPGGFGPGG 145
Score = 33.5 bits (75), Expect = 0.18
Identities = 38/126 (30%), Positives = 46/126 (36%), Gaps = 24/126 (19%)
Query: 22 CKKRPKPGGWNTGGSRYPGQGSP---GGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPH- 77
CK R + GG GG R GS GG+R + HGGG G GGG+G
Sbjct: 7 CKSRGRGGGG--GGFRGFSSGSAVVSGGSRRSTSSFSCLSR-HGGGGGGFGGGGFGSRSL 63
Query: 78 ----------------GGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAV 121
GGG+G GG G+GGG + + G G
Sbjct: 64 VGLGGTKSISISVAGGGGGFGAA-GGFGGRGGGFGGGSSFGGGSGFSGGGFGGGGFGGGR 122
Query: 122 VGGLGG 127
GG GG
Sbjct: 123 FGGFGG 128
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 56.6 bits (135), Expect = 2e-08
Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGG 88
GG + G Y G S GG + GGG+G GGG+G GGG+G GGG+G GG
Sbjct: 425 GGDRSSGGGYSGDRS-GGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGY 483
Query: 89 WGQGGG 94
G GG
Sbjct: 484 GGDRGG 489
Score = 56.2 bits (134), Expect = 3e-08
Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPH-GGGWGQPHGGGWGQPHGGGWGQPHGG 87
GG +GG Y G S GG + GGG+G GGG+G GGG+G GGG+G GG
Sbjct: 416 GGDRSGGG-YGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGG 474
Query: 88 GWGQGGG 94
G+G G
Sbjct: 475 GYGGDRG 481
Score = 50.1 bits (118), Expect = 2e-06
Identities = 32/72 (44%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 29 GGWNTGGSR--YPGQGSPGGNRYPPQGGGGW-GQPHGGGWGQPH-GGGWGQPHGGGWGQP 84
G GG R Y G S GG GGG+ G GGG+G GGG+G GGG+G
Sbjct: 404 GRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGD 463
Query: 85 HGGGWG--QGGG 94
GGG+G +GGG
Sbjct: 464 RGGGYGGDRGGG 475
Score = 49.7 bits (117), Expect = 2e-06
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPH-GGGWGQPHGGGWGQPHGG 87
GG+ Y G S GG GG G+G GG+G GGG+G GGG+G GG
Sbjct: 510 GGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGG 569
Query: 88 GWGQGGGTHSQWN 100
G+ GG + N
Sbjct: 570 YGGKMGGRNDYRN 582
Score = 49.3 bits (116), Expect = 3e-06
Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGG 88
GG +GG G G G Y GGG+G GGG+G GG+G GGG+G GG
Sbjct: 444 GGDRSGG----GYGGDRGGGYGGDRGGGYGGDRGGGYGGDR-GGYGGDRGGGYGGDRGGY 498
Query: 89 WGQGGG 94
G GG
Sbjct: 499 GGDRGG 504
Score = 48.1 bits (113), Expect = 7e-06
Identities = 37/83 (44%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 25 RPKPG---GWNTGGSR-YPGQGSPGGNRYPPQG---GGGWG--QPHGGGW-GQPHGGGWG 74
RP G G GG R Y G+G GG+R G GGG+G + GGG+ G GGG+G
Sbjct: 385 RPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYG 444
Query: 75 QPH-GGGWGQPHGGGWG--QGGG 94
GGG+G GGG+G +GGG
Sbjct: 445 GDRSGGGYGGDRGGGYGGDRGGG 467
Score = 45.8 bits (107), Expect = 4e-05
Identities = 28/71 (39%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 30 GWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGG------GWGQ 83
G GG R G G G Y GGG+G GG +G GGG+G GG G+G
Sbjct: 449 GGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGG-YGGDRGGGYGGDRGGYGGDRGGYGG 507
Query: 84 PHGGGWGQGGG 94
GG G GG
Sbjct: 508 DRGGYGGDRGG 518
Score = 43.5 bits (101), Expect = 2e-04
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 30 GWNTGGSRYPGQGSPGGNRYPPQGG--GGWGQPHGG------GWGQPHGGGWGQPHGGGW 81
G + GG +G GG+R GG GG+G GG G+G GG G GG+
Sbjct: 469 GGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGY 528
Query: 82 GQPHGGGWGQGG 93
G GGG G GG
Sbjct: 529 GGDRGGGSGYGG 540
Score = 42.0 bits (97), Expect = 5e-04
Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 26 PKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPH--GGGW-G 82
P+P G + G+G G Y +G GG G GG G GGG+G GGG+ G
Sbjct: 379 PRPEDSRPSGGDFRGRGYGGERGY--RGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSG 436
Query: 83 QPHGGGWG---QGGG 94
GGG+G GGG
Sbjct: 437 DRSGGGYGGDRSGGG 451
Score = 38.5 bits (88), Expect = 0.006
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 29 GGWNTGGSRYPG-QGSPGGNR--YPPQGGGGWGQPHGGGWGQPHGGG--WGQPHGGGW-G 82
GG+ Y G +G GG+R Y GG G GG+G GGG +G GG+ G
Sbjct: 489 GGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGG 548
Query: 83 QPHGGGWG--QGGG 94
GGG+G +GGG
Sbjct: 549 DRSGGGYGGDRGGG 562
Score = 34.3 bits (77), Expect = 0.11
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 14/77 (18%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGG-----GGWGQPHGGGWGQPHG-GGWGQPHGG--G 80
GG+ GG R G G G +GG GG+G GG +G GG+G GG G
Sbjct: 481 GGY--GGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGG-YGGDRSRGGYGGDRGGGSG 537
Query: 81 WGQPHGGGWG---QGGG 94
+G GG+G GGG
Sbjct: 538 YGGDRSGGYGGDRSGGG 554
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 53 GGGGWGQPHGGGWGQPHG--GGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMK 110
GG G G+ GG+ G G G P G W P+ + N+ ++P+
Sbjct: 325 GGSGGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDS 384
Query: 111 HMAGAAAAGAVVGGLGGY 128
+G G GG GY
Sbjct: 385 RPSGGDFRGRGYGGERGY 402
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 56.6 bits (135), Expect = 2e-08
Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGG 88
GG + G Y G S GG + GGG+G GGG+G GGG+G GGG+G GG
Sbjct: 428 GGDRSSGGGYSGDRS-GGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGY 486
Query: 89 WGQGGG 94
G GG
Sbjct: 487 GGDRGG 492
Score = 56.2 bits (134), Expect = 3e-08
Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPH-GGGWGQPHGGGWGQPHGGGWGQPHGG 87
GG +GG Y G S GG + GGG+G GGG+G GGG+G GGG+G GG
Sbjct: 419 GGDRSGGG-YGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGG 477
Query: 88 GWGQGGG 94
G+G G
Sbjct: 478 GYGGDRG 484
Score = 50.1 bits (118), Expect = 2e-06
Identities = 32/72 (44%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 29 GGWNTGGSR--YPGQGSPGGNRYPPQGGGGW-GQPHGGGWGQPH-GGGWGQPHGGGWGQP 84
G GG R Y G S GG GGG+ G GGG+G GGG+G GGG+G
Sbjct: 407 GRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGD 466
Query: 85 HGGGWG--QGGG 94
GGG+G +GGG
Sbjct: 467 RGGGYGGDRGGG 478
Score = 49.7 bits (117), Expect = 2e-06
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPH-GGGWGQPHGGGWGQPHGG 87
GG+ Y G S GG GG G+G GG+G GGG+G GGG+G GG
Sbjct: 513 GGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGG 572
Query: 88 GWGQGGGTHSQWN 100
G+ GG + N
Sbjct: 573 YGGKMGGRNDYRN 585
Score = 49.3 bits (116), Expect = 3e-06
Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGG 88
GG +GG G G G Y GGG+G GGG+G GG+G GGG+G GG
Sbjct: 447 GGDRSGG----GYGGDRGGGYGGDRGGGYGGDRGGGYGGDR-GGYGGDRGGGYGGDRGGY 501
Query: 89 WGQGGG 94
G GG
Sbjct: 502 GGDRGG 507
Score = 48.1 bits (113), Expect = 7e-06
Identities = 37/83 (44%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 25 RPKPG---GWNTGGSR-YPGQGSPGGNRYPPQG---GGGWG--QPHGGGW-GQPHGGGWG 74
RP G G GG R Y G+G GG+R G GGG+G + GGG+ G GGG+G
Sbjct: 388 RPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYG 447
Query: 75 QPH-GGGWGQPHGGGWG--QGGG 94
GGG+G GGG+G +GGG
Sbjct: 448 GDRSGGGYGGDRGGGYGGDRGGG 470
Score = 45.8 bits (107), Expect = 4e-05
Identities = 28/71 (39%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 30 GWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGG------GWGQ 83
G GG R G G G Y GGG+G GG +G GGG+G GG G+G
Sbjct: 452 GGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGG-YGGDRGGGYGGDRGGYGGDRGGYGG 510
Query: 84 PHGGGWGQGGG 94
GG G GG
Sbjct: 511 DRGGYGGDRGG 521
Score = 43.5 bits (101), Expect = 2e-04
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 30 GWNTGGSRYPGQGSPGGNRYPPQGG--GGWGQPHG------GGWGQPHGGGWGQPHGGGW 81
G + GG +G GG+R GG GG+G G GG+G GG G GG+
Sbjct: 472 GGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGY 531
Query: 82 GQPHGGGWGQGG 93
G GGG G GG
Sbjct: 532 GGDRGGGSGYGG 543
Score = 42.0 bits (97), Expect = 5e-04
Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 26 PKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPH--GGGW-G 82
P+P G + G+G G Y +G GG G GG G GGG+G GGG+ G
Sbjct: 382 PRPEDSRPSGGDFRGRGYGGERGY--RGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSG 439
Query: 83 QPHGGGWG---QGGG 94
GGG+G GGG
Sbjct: 440 DRSGGGYGGDRSGGG 454
Score = 38.5 bits (88), Expect = 0.006
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 29 GGWNTGGSRYPG-QGSPGGNR--YPPQGGGGWGQPHGGGWGQPHGGG--WGQPHGGGW-G 82
GG+ Y G +G GG+R Y GG G GG+G GGG +G GG+ G
Sbjct: 492 GGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGG 551
Query: 83 QPHGGGWG--QGGG 94
GGG+G +GGG
Sbjct: 552 DRSGGGYGGDRGGG 565
Score = 34.3 bits (77), Expect = 0.11
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 14/77 (18%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGG-----GGWGQPHGGGWGQPHG-GGWGQPHGG--G 80
GG+ GG R G G G +GG GG+G GG +G GG+G GG G
Sbjct: 484 GGY--GGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGG-YGGDRSRGGYGGDRGGGSG 540
Query: 81 WGQPHGGGWG---QGGG 94
+G GG+G GGG
Sbjct: 541 YGGDRSGGYGGDRSGGG 557
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 53 GGGGWGQPHGGGWGQPHG--GGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMK 110
GG G G+ GG+ G G G P G W P+ + N+ ++P+
Sbjct: 328 GGSGGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDS 387
Query: 111 HMAGAAAAGAVVGGLGGY 128
+G G GG GY
Sbjct: 388 RPSGGDFRGRGYGGERGY 405
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 54.3 bits (129), Expect = 1e-07
Identities = 36/95 (37%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 39 PGQGSPGGNRYPP-----QGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGG 93
P + P PP +GGGG G GGG G GGG G GGWG GGGWG GG
Sbjct: 312 PNEIEPPPPEMPPWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWG-GGGGGWGGGG 370
Query: 94 GTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGY 128
G W G GG GGY
Sbjct: 371 GGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGY 405
Score = 54.3 bits (129), Expect = 1e-07
Identities = 35/66 (53%), Positives = 36/66 (54%), Gaps = 20/66 (30%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGG 88
GGW GG G G GG GGGG G+ GGWG GGGWG GGG G GGG
Sbjct: 336 GGWGGGG----GGGGRGG------GGGGGGR---GGWGGG-GGGWG---GGGGG---GGG 375
Query: 89 WGQGGG 94
WG GGG
Sbjct: 376 WGGGGG 381
Score = 52.4 bits (124), Expect = 4e-07
Identities = 33/81 (40%), Positives = 40/81 (49%), Gaps = 14/81 (17%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHG----------GGWGQPHGGGWGQPHG 78
GGW GG + G G GG + GGGG G G GG G G G+G P+G
Sbjct: 357 GGWGGGGGGWGGGGGGGGG-WGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYG 415
Query: 79 GGWGQPHGGGWGQGGGTHSQW 99
GG G GGG G GGG + ++
Sbjct: 416 GGGG---GGGGGGGGGGYRRY 433
>gi|56699482 hypothetical protein LOC25940 [Homo sapiens]
Length = 518
Score = 52.8 bits (125), Expect = 3e-07
Identities = 41/131 (31%), Positives = 54/131 (41%), Gaps = 19/131 (14%)
Query: 30 GWNTGGSRYPGQGSPGGNRYPPQGGGGWGQ---PHGGGWGQPHGGGWGQPHGGGW--GQP 84
G GG + G GG+ QGGG G+ HGG GGG G H GGW G
Sbjct: 337 GGGRGGYEHSSYGGRGGH---EQGGGRGGRGGYDHGG-----RGGGRGNKHQGGWTDGGS 388
Query: 85 HGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGSD 144
GGG Q GG +P + G ++ G GG GG+ S+ + G
Sbjct: 389 GGGGGYQDGGYRDSGFQPG------GYHGGHSSGGYQGGGYGGFQTSSSYTGSGYQGGGY 442
Query: 145 YEDRYYRENMH 155
+D Y++ H
Sbjct: 443 QQDNRYQDGGH 453
Score = 40.0 bits (92), Expect = 0.002
Identities = 30/72 (41%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 29 GGWNTGGSRYPGQGSPGG-----NRYPPQGGGGWGQPHGGGWGQPHGGGWG--QPHGGGW 81
GG+ T S Y G G GG NRY Q GG G GG G+ GG G GGGW
Sbjct: 424 GGFQTSSS-YTGSGYQGGGYQQDNRY--QDGGHHGDRGGGRGGRGGRGGRGGRAGQGGGW 480
Query: 82 GQPHGGGWGQGG 93
G + QGG
Sbjct: 481 GGRGSQNYHQGG 492
Score = 38.9 bits (89), Expect = 0.004
Identities = 38/135 (28%), Positives = 45/135 (33%), Gaps = 8/135 (5%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPH-GG 87
GGW GGS G GG R GG+ H G Q G G Q G + GG
Sbjct: 381 GGWTDGGSGGGGGYQDGGYRDSGFQPGGYHGGHSSGGYQGGGYGGFQTSSSYTGSGYQGG 440
Query: 88 GWG-----QGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLG--GYMLGSAMSRPIIH 140
G+ Q GG H + G A G GG G Y G + H
Sbjct: 441 GYQQDNRYQDGGHHGDRGGGRGGRGGRGGRGGRAGQGGGWGGRGSQNYHQGGQFEQHFQH 500
Query: 141 FGSDYEDRYYRENMH 155
G Y + + H
Sbjct: 501 GGYQYNHSGFGQGRH 515
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 52.0 bits (123), Expect = 5e-07
Identities = 41/105 (39%), Positives = 49/105 (46%), Gaps = 17/105 (16%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGG 88
GG GG + G G GG+ GGG G HGGG G GGG+G GG G GG
Sbjct: 460 GGGGRGGGSFGG-GYGGGS----SGGGSSGGGHGGGHGGSSGGGYG---GGSSGGGSSGG 511
Query: 89 WGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSA 133
G GGG+ S + S +G G+ GG GGY GS+
Sbjct: 512 -GYGGGSSSGGHGGSS--------SGGYGGGSSGGGGGGYGGGSS 547
Score = 45.4 bits (106), Expect = 5e-05
Identities = 61/228 (26%), Positives = 88/228 (38%), Gaps = 43/228 (18%)
Query: 25 RPKPGGWNTGGSR--YPGQGSPGGNRY-----PPQGGGGWGQPHGG--------GWGQPH 69
R GG GGS Y G G GG + GG +G GG G G
Sbjct: 59 RGSSGGGCFGGSSGGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGGGSFGGGSFG 118
Query: 70 GGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYM 129
GGG+G GGG+G GGG+G GG S K + N + + A+ Y
Sbjct: 119 GGGFG---GGGFGGGFGGGFGGDGGLLSGNEKVTMQNLNDRLASYLDKVRALEE--SNYE 173
Query: 130 LGSAMSRPIIHFGSDY--EDRYYRENMHRYPNQVYYRPMDEYSNQ-NNFVHDCVNITIKQ 186
L + G+ + E R Y + YY+ +D+ NQ N D NI ++
Sbjct: 174 LEGKIKEWYEKHGNSHQGEPRDYSK---------YYKTIDDLKNQILNLTTDNANILLQI 224
Query: 187 HTVTTTT-----KGEN------FTETDVKMMERVVEQMCITQYERESQ 223
K EN E D+ + RV++++ +T+ + E Q
Sbjct: 225 DNARLAADDFRLKYENEVALRQSVEADINGLRRVLDELTLTKADLEMQ 272
Score = 44.7 bits (104), Expect = 8e-05
Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGG- 87
GG + GG Y G S GG+ GGG HGG +GGG GGG+G G
Sbjct: 492 GGSSGGG--YGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGG 549
Query: 88 ----GWGQGGGTHSQWNKPS 103
G G GGG+ S +K S
Sbjct: 550 GSSSGGGYGGGSSSGGHKSS 569
Score = 42.4 bits (98), Expect = 4e-04
Identities = 30/82 (36%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGG 88
GG ++GG Y G S GG+ GG G G GGG G +GGG GGG G G
Sbjct: 505 GGGSSGGG-YGGGSSSGGHGGSSSGGYGGGSSGGGGGG--YGGG---SSGGGSSSGGGYG 558
Query: 89 WGQGGGTHSQWNKPSKPKTNMK 110
G G H + S +++ K
Sbjct: 559 GGSSSGGHKSSSSGSVGESSSK 580
Score = 29.3 bits (64), Expect = 3.4
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQ-PHGGGWGQPHGGGWGQPHGG 87
GG ++GG Y G S GG G G G GGG+G GG G G+
Sbjct: 523 GGSSSGG--YGGGSSGGGGGGYGGGSSGGGSSSGGGYGGGSSSGGHKSSSSGSVGESSSK 580
Query: 88 G 88
G
Sbjct: 581 G 581
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 52.0 bits (123), Expect = 5e-07
Identities = 31/70 (44%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 53 GGGGWGQPHGGGWGQPHGGG-WGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKH 111
GGGG GGG G GGG G P GGG G P GGG G GGG P ++ H
Sbjct: 139 GGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSAHPHPHMHSLGH 198
Query: 112 MAGAAAAGAV 121
++ AAA A+
Sbjct: 199 LSHPAAAAAM 208
Score = 48.5 bits (114), Expect = 5e-06
Identities = 41/113 (36%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 34 GGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHG--GGWGQPHGGGWGQ 91
GG + G G GG P GGG G P GGG G P GGG G G GG PH
Sbjct: 140 GGGAHDGPGGGGG---PGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSAHPHPHMHSL 196
Query: 92 GGGTH----SQWNKPS-KPKTNM-----KHMAGAAAAGAVVGGLGGYMLGSAM 134
G +H + N PS P + H A AAAA A G + +A+
Sbjct: 197 GHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAV 249
Score = 30.4 bits (67), Expect = 1.5
Identities = 35/115 (30%), Positives = 37/115 (32%), Gaps = 27/115 (23%)
Query: 26 PKPGGWNTGGSRYPGQGSPGGNRYPPQGG--GGWGQPHG-----GGWGQPHGGG-----W 73
P GG GG G G PGG P GG GG PH G P
Sbjct: 153 PGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPS 212
Query: 74 GQPHGG--GWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLG 126
G PH G HG Q +A A+AA AVVG G
Sbjct: 213 GLPHPGLVAAAAHHGAAAAAAAAAAGQ-------------VAAASAAAAVVGAAG 254
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 50.8 bits (120), Expect = 1e-06
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGG- 87
GG+ +GGS Y GG Y GGGG G+ G G +G G G GG G HG
Sbjct: 523 GGYGSGGSSY----GSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGGGGGHGSY 578
Query: 88 GWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLG 126
G G G + + ++ +G ++G +GG G
Sbjct: 579 GSGSSSGGYRGGSGGGGGGSSGGRGSGGGSSGGSIGGRG 617
Score = 47.0 bits (110), Expect = 2e-05
Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 34 GGSRYPGQGS--PGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ 91
GGSR G G GG+ Y GGG +G GGG G+ G G +G G G GG G
Sbjct: 515 GGSRGGGGGGYGSGGSSYG-SGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGGGG 573
Query: 92 GGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGG 124
G G++ + + G ++ G GG
Sbjct: 574 GHGSYGSGSSSGGYRGGSGGGGGGSSGGRGSGG 606
Score = 42.4 bits (98), Expect = 4e-04
Identities = 36/116 (31%), Positives = 46/116 (39%), Gaps = 30/116 (25%)
Query: 32 NTGGSRYPGQGSPGGNRYPPQGGGGWGQ------PHGGGWGQPHGGGWGQPHGGGWGQPH 85
+T + G GS GG GGGG+G GG +G GGG G+ G G +
Sbjct: 506 STSHTTISGGGSRGG------GGGGYGSGGSSYGSGGGSYGSGGGGGGGRGSYGSGGSSY 559
Query: 86 GGGWGQ-----GGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSR 136
G G G GGG H + S ++G GG GG GS+ R
Sbjct: 560 GSGGGSYGSGGGGGGHGSYGSGS-------------SSGGYRGGSGGGGGGSSGGR 602
Score = 40.8 bits (94), Expect = 0.001
Identities = 32/103 (31%), Positives = 36/103 (34%), Gaps = 35/103 (33%)
Query: 45 GGNRYPPQGGGGWGQPHGGGWGQ----------------PHGGGWGQPHGGGWGQPHGGG 88
GG R+ GGGG GGG+G GGG G GGG+G GG
Sbjct: 42 GGGRFSSCGGGGGSFGAGGGFGSRSLVNLGGSKSISISVARGGGRGSGFGGGYGGGGFGG 101
Query: 89 WGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLG 131
G GGG G G GG GG+ G
Sbjct: 102 GGFGGG-------------------GFGGGGIGGGGFGGFGSG 125
Score = 40.8 bits (94), Expect = 0.001
Identities = 31/67 (46%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 29 GGWNTG-GSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGG 87
GG +G G Y G G GG GGGG+G GGG G GG+G GG G GG
Sbjct: 84 GGRGSGFGGGYGGGGFGGGGF----GGGGFG---GGGIGGGGFGGFGSGGGGFGGGGFGG 136
Query: 88 GWGQGGG 94
G G GGG
Sbjct: 137 G-GYGGG 142
Score = 40.4 bits (93), Expect = 0.001
Identities = 30/61 (49%), Positives = 33/61 (54%), Gaps = 11/61 (18%)
Query: 34 GGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGG 93
GG R G G GG GGGG+G GGG+G GGG G GGG+G GG G GG
Sbjct: 83 GGGR--GSGFGGGYGGGGFGGGGFG---GGGFG---GGGIG---GGGFGGFGSGGGGFGG 131
Query: 94 G 94
G
Sbjct: 132 G 132
Score = 39.7 bits (91), Expect = 0.003
Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ--PHG 86
GG GG + G G GG GGGG+G GG G GG G +GGG+G P G
Sbjct: 95 GGGGFGGGGFGGGGFGGGGI----GGGGFGGFGSGGGGFGGGGFGGGGYGGGYGPVCPPG 150
Query: 87 G 87
G
Sbjct: 151 G 151
Score = 38.9 bits (89), Expect = 0.004
Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 30 GWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGW 89
G GG + G G GG GGGG G GGG+G GG G GG G +GGG+
Sbjct: 91 GGGYGGGGFGGGGFGGGGF----GGGGIG---GGGFGGFGSGGGGFGGGGFGGGGYGGGY 143
Query: 90 G 90
G
Sbjct: 144 G 144
Score = 37.4 bits (85), Expect = 0.013
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 31 WNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWG 90
+ +GG Y G GG+ G G G GG G GGG G G G G GG
Sbjct: 559 YGSGGGSYGSGGGGGGH-----GSYGSGSSSGGYRGGSGGGGGGSSGGRGSGGGSSGGSI 613
Query: 91 QGGGTHSQWNKPSKPKTNMKHMA 113
G G+ S K S +++K ++
Sbjct: 614 GGRGSSSGGVKSSGGSSSVKFVS 636
Score = 35.8 bits (81), Expect = 0.037
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 19/84 (22%)
Query: 29 GGWNTGGS---RYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQ---------- 75
GG+++G + Y + + R GGG + GGG GGG+G
Sbjct: 15 GGFSSGSAGIINYQRRTTSSSTRRSGGGGGRFSSCGGGGGSFGAGGGFGSRSLVNLGGSK 74
Query: 76 ------PHGGGWGQPHGGGWGQGG 93
GGG G GGG+G GG
Sbjct: 75 SISISVARGGGRGSGFGGGYGGGG 98
Score = 34.7 bits (78), Expect = 0.082
Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGG 88
GG G Y S GG R GGGG G G+ GGG GG G GG
Sbjct: 569 GGGGGGHGSYGSGSSSGGYRGGSGGGGG-----GSSGGRGSGGGSSGGSIGGRGSSSGGV 623
Query: 89 WGQGGGT 95
GG +
Sbjct: 624 KSSGGSS 630
>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
Length = 1257
Score = 50.8 bits (120), Expect = 1e-06
Identities = 33/76 (43%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQG-------GGGWGQPHGGGWGQPHGGGWGQPHGGGW 81
G + GG GQGS GGN+ G G G GQ GGG G G G G HG G
Sbjct: 526 GQGSRGGQGSNGQGS-GGNQCSRDGQGTAGGHGSGGGQRPGGGHGSGGGQGPGDGHGSGG 584
Query: 82 GQPHGGGWGQGGGTHS 97
G+ GGG G G G S
Sbjct: 585 GKNSGGGKGSGSGKGS 600
Score = 43.1 bits (100), Expect = 2e-04
Identities = 30/69 (43%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 40 GQGSPGGNRYPPQGGGG---WGQPHGGGWGQPHGGGW--GQPHGGGWGQPHGGGWGQGGG 94
GQGS GG QG GG G G GGG G HG G GQ G G G GGG
Sbjct: 526 GQGSRGGQGSNGQGSGGNQCSRDGQGTAGGHGSGGGQRPGGGHGSGGGQGPGDGHGSGGG 585
Query: 95 THSQWNKPS 103
+S K S
Sbjct: 586 KNSGGGKGS 594
Score = 42.0 bits (97), Expect = 5e-04
Identities = 29/81 (35%), Positives = 32/81 (39%), Gaps = 17/81 (20%)
Query: 31 WNTGGSRYPGQG-----------SPGGNRYPPQGGGGW------GQPHGGGWGQPHGGGW 73
W +G R G G S GGN+ +G G GQ GG G G
Sbjct: 493 WGSGNGRGSGGGQGSNGQGSSSHSSGGNQCSGEGQGSRGGQGSNGQGSGGNQCSRDGQGT 552
Query: 74 GQPHGGGWGQPHGGGWGQGGG 94
HG G GQ GGG G GGG
Sbjct: 553 AGGHGSGGGQRPGGGHGSGGG 573
Score = 41.2 bits (95), Expect = 9e-04
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGG 88
GG +GG + PG G G GG G G HG G G+ GGG G G G G G
Sbjct: 554 GGHGSGGGQRPGGGHGSG------GGQGPGDGHGSGGGKNSGGGKGS--GSGKGSDGDGE 605
Query: 89 WGQGGGTHSQWNKPSKPK 106
G+ S + K ++ K
Sbjct: 606 RGKSLKKRSYFGKLTQSK 623
Score = 35.8 bits (81), Expect = 0.037
Identities = 22/73 (30%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 33 TGGSRYPGQGSPGGNR--------YPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQP 84
+G + +G+P G Y P G G G G GQ G H G Q
Sbjct: 463 SGSGNFGEEGNPQGKEDQEGSGGDYMPMNNWGSGNGRGSGGGQGSNGQGSSSHSSGGNQC 522
Query: 85 HGGGWGQGGGTHS 97
G G G GG S
Sbjct: 523 SGEGQGSRGGQGS 535
Score = 28.9 bits (63), Expect = 4.5
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Query: 37 RYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGG------GWGQPHGGGWG 90
R+P + G R + G G + G G P G + GG WG +G G G
Sbjct: 444 RHPAEAPNNGARLSSEVSGS-GSGNFGEEGNPQGKEDQEGSGGDYMPMNNWGSGNGRGSG 502
Query: 91 QGGGTHSQWNKPSKPKTNMKHMAGAAAAG 119
G G++ Q + N G + G
Sbjct: 503 GGQGSNGQGSSSHSSGGNQCSGEGQGSRG 531
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 49.3 bits (116), Expect = 3e-06
Identities = 36/110 (32%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 29 GGWNTGGSRYPGQGSPGGNR-----YPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ 83
G + G Y G G GGN Y +GG G G P G G +GGG G G
Sbjct: 258 GSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGN 317
Query: 84 PHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGL--GGYMLG 131
GG +G GG + N + ++N M G + G G GGY G
Sbjct: 318 FGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSG 367
Score = 45.1 bits (105), Expect = 6e-05
Identities = 30/67 (44%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 29 GGWNTG-GSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHG-GGWGQPHGGGWGQPHG 86
GG N G G + G+G GG GGGG +GGG G +G GG G +GGG G
Sbjct: 233 GGGNFGRGGNFGGRGGYGG------GGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSR 286
Query: 87 GGWGQGG 93
GG+G GG
Sbjct: 287 GGYGGGG 293
Score = 42.4 bits (98), Expect = 4e-04
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 21/83 (25%)
Query: 28 PGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGG---------------WGQPHGGG 72
PG N GG G G G N GGG +G GGG +G GG
Sbjct: 294 PGYGNQGGGYGGGGGYDGYNEGGNFGGGNYG---GGGNYNDFGNYSGQQQSNYGPMKGGS 350
Query: 73 WGQPHGGGWGQPHGGGWGQGGGT 95
+G G G P+GGG+G GGG+
Sbjct: 351 FG---GRSSGSPYGGGYGSGGGS 370
Score = 37.0 bits (84), Expect = 0.016
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 30 GWNTGGSRYPGQGSPGGN-----RYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQP 84
G+N GG+ G GGN Y Q +G GG +G G G P+GGG+G
Sbjct: 311 GYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFG---GRSSGSPYGGGYGS- 366
Query: 85 HGGGWGQGG 93
G G GG
Sbjct: 367 ---GGGSGG 372
Score = 35.8 bits (81), Expect = 0.037
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 30 GWNTGGSRYPGQGSPG--GN-------RYPPQGGGGWGQPHGGGWGQPHGGGWGQPHG-G 79
G N GG Y G G+ GN Y P GG +G G G P+GGG+G G G
Sbjct: 315 GGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFG---GRSSGSPYGGGYGSGGGSG 371
Query: 80 GWG 82
G+G
Sbjct: 372 GYG 374
Score = 33.9 bits (76), Expect = 0.14
Identities = 41/133 (30%), Positives = 48/133 (36%), Gaps = 23/133 (17%)
Query: 24 KRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQ--PHGGGWGQPHG-GG 80
+R + GG R G GGN GG G GGG G +GGG G +G GG
Sbjct: 213 QRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGG 272
Query: 81 WGQPHGGG------WGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAM 134
G +GGG G GGG N+ G G GG GY G
Sbjct: 273 DGGNYGGGPGYSSRGGYGGGGPGYGNQ-----------GGGYGGG---GGYDGYNEGGNF 318
Query: 135 SRPIIHFGSDYED 147
G +Y D
Sbjct: 319 GGGNYGGGGNYND 331
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 48.9 bits (115), Expect = 4e-06
Identities = 31/88 (35%), Positives = 35/88 (39%), Gaps = 20/88 (22%)
Query: 30 GWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGW 89
G TG R G SP P GG GWG P GG GQ G
Sbjct: 286 GRKTGSQRSSGSRSPS-----PSGGSGWGSPQ---------------RNGGSGQRSGAHG 325
Query: 90 GQGGGTHSQWNKPSKPKTNMKHMAGAAA 117
G+ G HS +KPS P ++ A AAA
Sbjct: 326 GRPGSAHSPPDKPSSPSPRVRDKAAAAA 353
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 48.5 bits (114), Expect = 5e-06
Identities = 49/153 (32%), Positives = 59/153 (38%), Gaps = 22/153 (14%)
Query: 28 PGGWNTGGSRY-----PGQGSPGGNRYPPQGGGGWGQ-------PHGGGWGQPHGGGWGQ 75
PGG GG + PG G GG+ + P G G G PH G G G G +
Sbjct: 787 PGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHR 846
Query: 76 PH-GGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAM 134
PH G G G PHG G ++ P + H G G GG+ G M
Sbjct: 847 PHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDGGHSHGGDM 906
Query: 135 S-RPII-HFGSDYEDRYYRENMHRYPNQVYYRP 165
S RP+ HF RY EN N +Y P
Sbjct: 907 SNRPVCRHFMMKGNCRY--EN-----NCAFYHP 932
Score = 47.4 bits (111), Expect = 1e-05
Identities = 35/91 (38%), Positives = 40/91 (43%), Gaps = 21/91 (23%)
Query: 25 RPKPGGWNTGGSRYPGQGSPGG------NRYPPQG-GGGWG---QPHGGGWGQPHGGGWG 74
R PGG GG + PGG P +G GGG G +PH G G GGG
Sbjct: 738 RGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGH 797
Query: 75 QPH--------GGGWGQPH---GGGWGQGGG 94
+PH GG +PH GGG G GGG
Sbjct: 798 RPHEGPGGGISGGSGHRPHEGPGGGMGAGGG 828
Score = 46.6 bits (109), Expect = 2e-05
Identities = 44/126 (34%), Positives = 49/126 (38%), Gaps = 23/126 (18%)
Query: 30 GWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPH---GGGWGQPHGGGWGQPHGGGWGQPH- 85
G +GG G+G PGG GGG +PH GGG G G + GGG G H
Sbjct: 727 GGRSGGGPPNGRGGPGGGMV----GGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHR 782
Query: 86 -----GGGWGQGGGTHSQWNKP----SKPKTNMKHMAGAAAAGAVVG-----GLGGYMLG 131
GG G GGG H P S + H GA G G GG M G
Sbjct: 783 PHEGPGGSMG-GGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGG 841
Query: 132 SAMSRP 137
S RP
Sbjct: 842 SGGHRP 847
Score = 45.8 bits (107), Expect = 4e-05
Identities = 44/140 (31%), Positives = 52/140 (37%), Gaps = 26/140 (18%)
Query: 20 GLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWG-----------QP 68
GL P G+ GG PG G G +PP GG PHGG G P
Sbjct: 618 GLLGPGPIANGFPPGG---PG-GPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPP 673
Query: 69 HGGG--WGQPHGGGWGQPHGGGWGQGGGTHSQ------WNKPSKPKTNMKHMAGAAAAGA 120
GG W P G P GG G G G + + N+P P + G + G
Sbjct: 674 RGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGG 733
Query: 121 VV---GGLGGYMLGSAMSRP 137
GG GG M+G RP
Sbjct: 734 PPNGRGGPGGGMVGGGGHRP 753
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 47.8 bits (112), Expect = 9e-06
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGG 88
G N GG G G GG+R GG G+G G G + GGG+G G
Sbjct: 246 GFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSN 305
Query: 89 WGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGG 127
+G GGG+++ + + +N M G G G GG
Sbjct: 306 FG-GGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG 343
Score = 38.1 bits (87), Expect = 0.007
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 24 KRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ 83
+R + G N GG R G G G + + G GG GG G GGG+G G G
Sbjct: 193 QRGRSGSGNFGGGR--GGGFGGNDNF---GRGGNFSGRGGFGGSRGGGGYGGSGDGYNGF 247
Query: 84 PHGGGWGQGGGTHS 97
+ GG+G GG +S
Sbjct: 248 GNDGGYGGGGPGYS 261
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 47.8 bits (112), Expect = 9e-06
Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 17/80 (21%)
Query: 30 GWNTGGSRYPGQGSPGGNRYPPQ----------GGGGWGQPHGGGWGQPHGGGWGQPHGG 79
G G R PG+G PGG+R+ + GGGG G GG G+ G G+ GG
Sbjct: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGG 65
Query: 80 --GWGQPHG-----GGWGQG 92
G G P G GGWG G
Sbjct: 66 RGGGGAPRGSRREPGGWGAG 85
Score = 29.6 bits (65), Expect = 2.6
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHG-----GGWG 66
GG + GG R G+G G R G GG G P G GGWG
Sbjct: 43 GGGDGGGRR--GRGRGRGFRGARGGRGGGGAPRGSRREPGGWG 83
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 46.6 bits (109), Expect = 2e-05
Identities = 35/96 (36%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 26 PKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPH 85
P P G+ T P + P P+GG G G GG G GGG G P G P
Sbjct: 350 PHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGS---GGGGAGTGGGAGGP--GASHLPP 404
Query: 86 GGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAV 121
G G G GGG ++PS + +A AAAA V
Sbjct: 405 GAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATV 440
Score = 32.7 bits (73), Expect = 0.31
Identities = 26/71 (36%), Positives = 28/71 (39%), Gaps = 27/71 (38%)
Query: 20 GLCKKRPKP-----------------GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHG 62
GLC K+ P GG TGG G G PG + PP G G P G
Sbjct: 360 GLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGG----GAGGPGASHLPPGAGAG---PGG 412
Query: 63 GG--WG-QPHG 70
G WG QP G
Sbjct: 413 GAMFWGHQPSG 423
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 46.2 bits (108), Expect = 3e-05
Identities = 38/116 (32%), Positives = 43/116 (37%), Gaps = 32/116 (27%)
Query: 29 GGWNTGGSR---------------YPGQGSPGGNRYPPQGGGGWGQPHGGG-WGQPHGG- 71
GG GG R Y G G GG Y GGGG G +GG +G GG
Sbjct: 196 GGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGF 255
Query: 72 GWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGG 127
G H +G GG G GGG S W G + +G GG GG
Sbjct: 256 GSYSQHQSSYGPMKSGGGGGGGG--SSW-------------GGRSNSGPYRGGYGG 296
Score = 45.8 bits (107), Expect = 4e-05
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 27/89 (30%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGG------------------WGQPHG 70
GG+N+ Y G G GG Y GGGG G +GG +G
Sbjct: 215 GGYNS----YGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKS 270
Query: 71 GGWGQPHGGGWG-----QPHGGGWGQGGG 94
GG G G WG P+ GG+G GGG
Sbjct: 271 GGGGGGGGSSWGGRSNSGPYRGGYGGGGG 299
Score = 43.9 bits (102), Expect = 1e-04
Identities = 34/103 (33%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 30 GWNTGGSRYP-----GQGSPGGNRYP--PQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWG 82
G GGSR G+G GG +GGGG + GG+G GGG+ GGG G
Sbjct: 182 GGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSY-GGYGGGGGGGYNAYGGGGGG 240
Query: 83 QPHGGG-WGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGG 124
+GG +G G G +++ MK G G+ GG
Sbjct: 241 SSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGG 283
Score = 38.5 bits (88), Expect = 0.006
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 44 PGGNRYPPQGGGGWGQPHGGGWGQPHGGGW---GQPHGGGWGQPHGGGWGQGGG 94
P + Y GGGG GG G+ GGG G GGG G GG+G GGG
Sbjct: 175 PKEDIYSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGG 228
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 45.8 bits (107), Expect = 4e-05
Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 53 GGGGWGQPHGGGWGQPHGGGWGQPHGGGW------GQPHGGGWGQGGGTHSQWNKPSKPK 106
GGGG G GGG G+ GG P GW Q GG G+G + K
Sbjct: 168 GGGGEGGGAGGGSGEREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASPSPSSSSAGKTP 227
Query: 107 TNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHF 141
+G+ AG GG G Y + +I F
Sbjct: 228 GTGSRNSGSGVAGGGSGGGGSYWKEGCLQSELIQF 262
Score = 29.6 bits (65), Expect = 2.6
Identities = 35/116 (30%), Positives = 42/116 (36%), Gaps = 22/116 (18%)
Query: 26 PKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPH 85
P P GW G R +G GG P P G+ G G + G G
Sbjct: 191 PPPRGWRGKGVRAQQRGGSGGEGASP-------SPSSSSAGKTPGTG-SRNSGSGVA--- 239
Query: 86 GGGWGQGGGTHSQWNKPSKPKTNM-----KHMAGAAAAGAVVGGLGGYMLGSAMSR 136
GGG G GG S W + + K A AAAA A + G G + SR
Sbjct: 240 GGGSGGGG---SYWKEGCLQSELIQFHLKKERAAAAAAAAQMHAKNG---GGSSSR 289
>gi|131412228 keratin 13 isoform b [Homo sapiens]
Length = 420
Score = 45.8 bits (107), Expect = 4e-05
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 30 GWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGW 89
G +T +R+ GS GG GGG GGG G GGG+G GGG+G GGG+
Sbjct: 28 GVSTCSTRFVSGGSAGGY------GGGVSCGFGGGAGSGFGGGYGGGLGGGYGGGLGGGF 81
Query: 90 GQG 92
G G
Sbjct: 82 GGG 84
Score = 38.9 bits (89), Expect = 0.004
Identities = 26/66 (39%), Positives = 29/66 (43%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGG 88
GG GGS G G GG +GGG GGG G GGG+G GGG
Sbjct: 13 GGGFGGGSCQLGGGRGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSGFGGGYGGGLGGG 72
Query: 89 WGQGGG 94
+G G G
Sbjct: 73 YGGGLG 78
>gi|131412225 keratin 13 isoform a [Homo sapiens]
Length = 458
Score = 45.8 bits (107), Expect = 4e-05
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 30 GWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGW 89
G +T +R+ GS GG GGG GGG G GGG+G GGG+G GGG+
Sbjct: 28 GVSTCSTRFVSGGSAGGY------GGGVSCGFGGGAGSGFGGGYGGGLGGGYGGGLGGGF 81
Query: 90 GQG 92
G G
Sbjct: 82 GGG 84
Score = 38.9 bits (89), Expect = 0.004
Identities = 26/66 (39%), Positives = 29/66 (43%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGG 88
GG GGS G G GG +GGG GGG G GGG+G GGG
Sbjct: 13 GGGFGGGSCQLGGGRGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSGFGGGYGGGLGGG 72
Query: 89 WGQGGG 94
+G G G
Sbjct: 73 YGGGLG 78
>gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens]
Length = 284
Score = 45.8 bits (107), Expect = 4e-05
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 26 PKPGGWNTGGSRYPGQG----SPGGNRYPPQGGGGWGQPHGGGW----------GQPHGG 71
P G G PG G +PGG PP GGG +G P+ G + G GG
Sbjct: 29 PPNSGGQYGSGLPPGGGYGGPAPGGPYGPPAGGGPYGHPNPGMFPSGTPGGPYGGAAPGG 88
Query: 72 GWGQPHGGGWGQPHGGGWGQGG 93
+GQP +G G +GQGG
Sbjct: 89 PYGQPPPSSYGAQQPGLYGQGG 110
Score = 44.7 bits (104), Expect = 8e-05
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 35 GSRYPGQGSPGGNRYP--PQGGG--GWGQPHGGGWGQPHGGG-WGQPHGGG-WGQPHGGG 88
G+ G+P G+ YP P GG G G P GGG+G P GG +G P GGG +G P+ G
Sbjct: 12 GAAGQAPGAPPGSYYPGPPNSGGQYGSGLPPGGGYGGPAPGGPYGPPAGGGPYGHPNPGM 71
Query: 89 WGQG 92
+ G
Sbjct: 72 FPSG 75
Score = 41.6 bits (96), Expect = 7e-04
Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 14/74 (18%)
Query: 35 GSRYPGQGSPGG---NRYPPQGGGGWGQP-HGGGWGQPHGGG-WGQPHGGGW-----GQP 84
GS YPG + GG + PP GGG+G P GG +G P GGG +G P+ G + G P
Sbjct: 23 GSYYPGPPNSGGQYGSGLPP--GGGYGGPAPGGPYGPPAGGGPYGHPNPGMFPSGTPGGP 80
Query: 85 HGGGWGQGGGTHSQ 98
+GG GG + Q
Sbjct: 81 YGG--AAPGGPYGQ 92
Score = 30.4 bits (67), Expect = 1.5
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 28 PGGWNTGGSRYPGQ---GSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQP 84
P G G PG G+PGG GG +GQP +G G +GQ P
Sbjct: 58 PAGGGPYGHPNPGMFPSGTPGGPYGGAAPGGPYGQPPPSSYGAQQPGLYGQGGAPPNVDP 117
Query: 85 HGGGWGQ 91
W Q
Sbjct: 118 EAYSWFQ 124
>gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a
[Homo sapiens]
Length = 346
Score = 45.1 bits (105), Expect = 6e-05
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 34 GGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHG-GGWGQPHGGG---W 89
GGS G G G R GG+G G G + GG+G P G GG+G+ GG +
Sbjct: 273 GGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTPDGLGGYGRGGGGSGGYY 332
Query: 90 GQGGGTHSQW 99
GQGG + W
Sbjct: 333 GQGGMSGGGW 342
Score = 38.5 bits (88), Expect = 0.006
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 12/56 (21%)
Query: 51 PQGGGGWGQPHGGGWGQP----HGG-------GWGQPHGGGWGQPHG-GGWGQGGG 94
P GG G G GG+G+ GG G G + GG+G P G GG+G+GGG
Sbjct: 271 PGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTPDGLGGYGRGGG 326
>gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b
[Homo sapiens]
Length = 331
Score = 45.1 bits (105), Expect = 6e-05
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 34 GGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHG-GGWGQPHGGG---W 89
GGS G G G R GG+G G G + GG+G P G GG+G+ GG +
Sbjct: 258 GGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTPDGLGGYGRGGGGSGGYY 317
Query: 90 GQGGGTHSQW 99
GQGG + W
Sbjct: 318 GQGGMSGGGW 327
Score = 38.5 bits (88), Expect = 0.006
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 12/56 (21%)
Query: 51 PQGGGGWGQPHGGGWGQP----HGG-------GWGQPHGGGWGQPHG-GGWGQGGG 94
P GG G G GG+G+ GG G G + GG+G P G GG+G+GGG
Sbjct: 256 PGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTPDGLGGYGRGGG 311
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 44.7 bits (104), Expect = 8e-05
Identities = 32/79 (40%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 26 PKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGG--GWGQPHGG-GWGQPHGGGWG 82
P PG GGS G G G+ Y GGG G GG G+G GG G G P G G
Sbjct: 221 PGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQG 280
Query: 83 QPHGGGW-GQGGGTHSQWN 100
+GGG+ GGG + N
Sbjct: 281 GGYGGGYDNYGGGNYGSGN 299
Score = 41.2 bits (95), Expect = 9e-04
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 20/109 (18%)
Query: 28 PGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGG 87
PGG N GGS PG G GG +GG G G P G G +GGG+ GG +G G
Sbjct: 251 PGGGNFGGS--PGYG--GG-----RGGYGGGGPGYGNQGGGYGGGYDNYGGGNYG---SG 298
Query: 88 GWGQGGGTHSQWNKPSKPKT----NMKHMAGAAAAG----AVVGGLGGY 128
+ G + Q + K+ ++M G G GG GGY
Sbjct: 299 NYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGY 347
Score = 39.7 bits (91), Expect = 0.003
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWG----QPHGGG------------ 72
GG+ GG Y QG G Y GGG +G + +G QP G
Sbjct: 267 GGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRN 326
Query: 73 WGQPHGGGWGQPHGGGWGQGGGTHSQW 99
G P+GGG P G G G G S++
Sbjct: 327 MGGPYGGGNYGPGGSGGSGGYGGRSRY 353
Score = 34.7 bits (78), Expect = 0.082
Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQG----GGGWGQPHGGGWGQPHGGGWGQPHGGGWGQP 84
G + G SR GGN P G GG G G G+G + G G P GG +G
Sbjct: 205 GNFGFGDSR-----GGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGS 259
Query: 85 --HGGGWGQGGG 94
+GGG G GG
Sbjct: 260 PGYGGGRGGYGG 271
Score = 33.5 bits (75), Expect = 0.18
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 34 GGSRYPGQGSPGGNRYPPQGGGGW-GQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQG 92
GG+ G GG + P G + G G G G+ G G+ GG G GG G G
Sbjct: 204 GGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYG 263
Query: 93 GG 94
GG
Sbjct: 264 GG 265
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 44.7 bits (104), Expect = 8e-05
Identities = 32/79 (40%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 26 PKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGG--GWGQPHGG-GWGQPHGGGWG 82
P PG GGS G G G+ Y GGG G GG G+G GG G G P G G
Sbjct: 209 PGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQG 268
Query: 83 QPHGGGW-GQGGGTHSQWN 100
+GGG+ GGG + N
Sbjct: 269 GGYGGGYDNYGGGNYGSGN 287
Score = 41.2 bits (95), Expect = 9e-04
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 20/109 (18%)
Query: 28 PGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGG 87
PGG N GGS PG G GG +GG G G P G G +GGG+ GG +G G
Sbjct: 239 PGGGNFGGS--PGYG--GG-----RGGYGGGGPGYGNQGGGYGGGYDNYGGGNYG---SG 286
Query: 88 GWGQGGGTHSQWNKPSKPKT----NMKHMAGAAAAG----AVVGGLGGY 128
+ G + Q + K+ ++M G G GG GGY
Sbjct: 287 NYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGY 335
Score = 39.7 bits (91), Expect = 0.003
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWG----QPHGGG------------ 72
GG+ GG Y QG G Y GGG +G + +G QP G
Sbjct: 255 GGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRN 314
Query: 73 WGQPHGGGWGQPHGGGWGQGGGTHSQW 99
G P+GGG P G G G G S++
Sbjct: 315 MGGPYGGGNYGPGGSGGSGGYGGRSRY 341
Score = 34.7 bits (78), Expect = 0.082
Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 29 GGWNTGGSRYPGQGSPGGNRYPPQG----GGGWGQPHGGGWGQPHGGGWGQPHGGGWGQP 84
G + G SR GGN P G GG G G G+G + G G P GG +G
Sbjct: 193 GNFGFGDSR-----GGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGS 247
Query: 85 --HGGGWGQGGG 94
+GGG G GG
Sbjct: 248 PGYGGGRGGYGG 259
Score = 33.5 bits (75), Expect = 0.18
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 34 GGSRYPGQGSPGGNRYPPQGGGGW-GQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQG 92
GG+ G GG + P G + G G G G+ G G+ GG G GG G G
Sbjct: 192 GGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYG 251
Query: 93 GG 94
GG
Sbjct: 252 GG 253
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.139 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,860,628
Number of Sequences: 37866
Number of extensions: 870093
Number of successful extensions: 10588
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 273
Number of HSP's that attempted gapping in prelim test: 4186
Number of HSP's gapped (non-prelim): 2566
length of query: 253
length of database: 18,247,518
effective HSP length: 100
effective length of query: 153
effective length of database: 14,460,918
effective search space: 2212520454
effective search space used: 2212520454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.