Guide to the Human Genome
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Name: KRT13 Sequence: fasta or formatted (420aa) NCBI GI: 131412228
Description:

keratin 13 isoform b

Referenced in:

Keratins

Other entries for this name:
alt prot [458aa] keratin 13 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         31           2
 C cysteine            1.4          6           1
 D aspartate           4.3         18           2
 E glutamate          11.0         46           3
 F phenylalanine       2.6         11           1
 G glycine            12.9         54           3
 H histidine           0.7          3           1
 I isoleucine          4.3         18           1
 K lysine              4.5         19           2
 L leucine            11.0         46           2
 M methionine          2.9         12           1
 N asparagine          4.3         18           2
 P proline             1.4          6           2
 Q glutamine           5.5         23           2
 R arginine            6.2         26           2
 S serine              7.1         30           3
 T threonine           5.0         21           1
 V valine              3.8         16           2
 W tryptophan          0.5          2           1
 Y tyrosine            3.3         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 13 isoform b 
KRT13                 0.986   keratin 13 isoform a 
KRT15                 0.757   keratin 15 
KRT16                 0.643   keratin 16 
KRT14                 0.639   keratin 14 
KRT17                 0.583   keratin 17 
KRT10                 0.576   keratin 10 
KRT19                 0.555   keratin 19 
KRT12                 0.538   keratin 12 
KRT24                 0.525   keratin 24 
KRT9                  0.504   keratin 9 
KRT27                 0.484   keratin 27 
KRT28                 0.463   keratin 25D 
KRT25                 0.453   keratin 25 
KRT36                 0.437   keratin 36 
KRT35                 0.435   keratin 35 
KRT26                 0.425   keratin 26 
KRT20                 0.419   keratin 20 
KRT32                 0.410   keratin 32 
KRT31                 0.405   keratin 31 
KRT33A                0.404   keratin 33A 
KRT33B                0.399   type I hair keratin 3B 
KRT34                 0.391   keratin 34 
KRT18                 0.369   keratin 18 
KRT18                 0.369   keratin 18 
KRT40                 0.363   type I hair keratin KA36 
KRT38                 0.358   keratin 38 
KRT39                 0.354   type I hair keratin KA35 
KRT37                 0.353   keratin 37 
KRT23                 0.352   keratin 23 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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