Guide to the Human Genome
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Name: FAM98A Sequence: fasta or formatted (518aa) NCBI GI: 56699482
Description:

hypothetical protein LOC25940

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         26           2
 C cysteine            1.5          8           1
 D aspartate           3.3         17           1
 E glutamate           6.4         33           2
 F phenylalanine       2.3         12           2
 G glycine            19.5        101           5
 H histidine           3.1         16           2
 I isoleucine          3.1         16           1
 K lysine              5.6         29           2
 L leucine             8.1         42           4
 M methionine          1.7          9           1
 N asparagine          2.9         15           1
 P proline             4.8         25           4
 Q glutamine           6.8         35           3
 R arginine            6.2         32           2
 S serine              7.3         38           3
 T threonine           3.7         19           2
 V valine              3.5         18           1
 W tryptophan          1.2          6           1
 Y tyrosine            4.1         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC25940 
FAM98B                0.398   family with sequence similarity 98, member B isofor...
FAM98B                0.263   family with sequence similarity 98, member B isofor...
FAM98C                0.185   hypothetical protein LOC147965 
TAF15                 0.082   TBP-associated factor 15 isoform 2 
TAF15                 0.082   TBP-associated factor 15 isoform 1 
KRT9                  0.080   keratin 9 
HNRNPA3               0.076   heterogeneous nuclear ribonucleoprotein A3 
HNRNPA1               0.075   heterogeneous nuclear ribonucleoprotein A1 isoform b...
KRT10                 0.066   keratin 10 
PPP1R10               0.062   protein phosphatase 1, regulatory subunit 10 
LOR                   0.058   loricrin 
KRT1                  0.057   keratin 1 
ILF3                  0.055   interleukin enhancer binding factor 3 isoform d [Ho...
ILF3                  0.055   interleukin enhancer binding factor 3 isoform a [Hom...
HNRNPA2B1             0.054   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA2B1             0.054   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
HRNR                  0.053   hornerin 
HNRNPA1               0.052   heterogeneous nuclear ribonucleoprotein A1 isoform a ...
FUS                   0.052   fusion (involved in t(12;16) in malignant liposarcoma...
HNRNPA0               0.051   heterogeneous nuclear ribonucleoprotein A0 
KRT2                  0.051   keratin 2 
FLG2                  0.050   filaggrin family member 2 
HNRNPA1L2             0.047   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1L2             0.047   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
KRT3                  0.044   keratin 3 
DHX9                  0.044   DEAH (Asp-Glu-Ala-His) box polypeptide 9 
EWSR1                 0.044   Ewing sarcoma breakpoint region 1 isoform 4 
EWSR1                 0.044   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.044   Ewing sarcoma breakpoint region 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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