Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HNRNPH3 Sequence: fasta or formatted (346aa) NCBI GI: 14141157
Description:

heterogeneous nuclear ribonucleoprotein H3 isoform a

Referenced in:

hnRNP

Other entries for this name:
alt prot [331aa] heterogeneous nuclear ribonucleoprotein H3 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         16           2
 C cysteine            0.3          1           1
 D aspartate           7.2         25           2
 E glutamate           4.0         14           2
 F phenylalanine       4.6         16           2
 G glycine            24.3         84           4
 H histidine           2.9         10           1
 I isoleucine          4.0         14           1
 K lysine              2.3          8           1
 L leucine             3.5         12           2
 M methionine          4.9         17           1
 N asparagine          4.6         16           2
 P proline             3.8         13           2
 Q glutamine           2.3          8           1
 R arginine            8.1         28           2
 S serine              5.5         19           2
 T threonine           2.6          9           1
 V valine              3.2         11           1
 W tryptophan          0.6          2           1
 Y tyrosine            6.6         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heterogeneous nuclear ribonucleoprotein H3 isoform a... 
HNRNPH3               0.939   heterogeneous nuclear ribonucleoprotein H3 isoform b...
HNRNPH1               0.542   heterogeneous nuclear ribonucleoprotein H1 
HNRNPH2               0.540   heterogeneous nuclear ribonucleoprotein H2 
HNRNPH2               0.540   heterogeneous nuclear ribonucleoprotein H2 
HNRNPF                0.457   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.457   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.457   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.457   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.457   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.457   heterogeneous nuclear ribonucleoprotein F 
GRSF1                 0.125   G-rich RNA sequence binding factor 1 isoform 1 [Hom...
GRSF1                 0.125   G-rich RNA sequence binding factor 1 isoform 2 [Hom...
FUS                   0.081   fusion (involved in t(12;16) in malignant liposarcoma...
ESRP1                 0.071   RNA binding motif protein 35A isoform 5 
ESRP1                 0.071   RNA binding motif protein 35A isoform 3 
ESRP1                 0.071   RNA binding motif protein 35A isoform 4 
ESRP1                 0.071   RNA binding motif protein 35A isoform 2 
ESRP1                 0.071   RNA binding motif protein 35A isoform 1 
ESRP2                 0.068   RNA binding motif protein 35B 
RBM12B                0.068   RNA binding motif protein 12B 
TAF15                 0.064   TBP-associated factor 15 isoform 2 
TAF15                 0.064   TBP-associated factor 15 isoform 1 
KRT9                  0.053   keratin 9 
LOR                   0.052   loricrin 
ILF3                  0.052   interleukin enhancer binding factor 3 isoform d [Ho...
ILF3                  0.052   interleukin enhancer binding factor 3 isoform a [Hom...
DHX9                  0.052   DEAH (Asp-Glu-Ala-His) box polypeptide 9 
KRT1                  0.049   keratin 1 
FAM98B                0.049   family with sequence similarity 98, member B isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press