PRNP 2489

Name: PRNP	Sequence: fasta or formatted (253aa)		NCBI GI: 122056628
Description: prion protein preproprotein		Referenced in: Additional Brain Proteins
Other entries for this name: alt mRNA [253aa] prion protein preproprotein alt mRNA [253aa] prion protein preproprotein alt mRNA [253aa] prion protein preproprotein alt mRNA [253aa] prion protein preproprotein
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.0 10 4 C cysteine 1.6 4 1 D aspartate 2.4 6 1 E glutamate 3.6 9 1 F phenylalanine 2.8 7 1 G glycine 17.8 45 4 H histidine 4.0 10 1 I isoleucine 3.6 9 2 K lysine 4.0 10 2 L leucine 4.7 12 2 M methionine 4.7 12 2 N asparagine 4.7 12 2 P proline 6.7 17 2 Q glutamine 5.9 15 1 R arginine 4.3 11 1 S serine 5.9 15 2 T threonine 5.1 13 4 V valine 5.5 14 2 W tryptophan 3.6 9 1 Y tyrosine 5.1 13 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 prion protein preproprotein PRNP 1.000 prion protein preproprotein PRNP 1.000 prion protein preproprotein PRNP 1.000 prion protein preproprotein PRNP 1.000 prion protein preproprotein KRT9 0.070 keratin 9 KRT2 0.060 keratin 2 TAF15 0.060 TBP-associated factor 15 isoform 2 TAF15 0.060 TBP-associated factor 15 isoform 1 FAM98B 0.055 family with sequence similarity 98, member B isofor... FAM98A 0.053 hypothetical protein LOC25940 KRT10 0.051 keratin 10 POU4F1 0.051 POU domain, class 4, transcription factor 1 KRT1 0.049 keratin 1 IRS4 0.049 insulin receptor substrate 4 HNRNPA3 0.045 heterogeneous nuclear ribonucleoprotein A3 FLJ37078 0.045 hypothetical protein LOC222183 PPP1R10 0.045 protein phosphatase 1, regulatory subunit 10 HNRNPA1 0.043 heterogeneous nuclear ribonucleoprotein A1 isoform b... AVEN 0.043 cell death regulator aven LBXCOR1 0.041 LBXCOR1 homolog HNRNPA0 0.039 heterogeneous nuclear ribonucleoprotein A0 C6orf174 0.039 hypothetical protein LOC387104 KRT13 0.039 keratin 13 isoform b KRT13 0.039 keratin 13 isoform a PEF1 0.039 penta-EF-hand domain containing 1 HNRNPH3 0.038 heterogeneous nuclear ribonucleoprotein H3 isoform a... HNRNPH3 0.038 heterogeneous nuclear ribonucleoprotein H3 isoform b... HNRNPA2B1 0.038 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... HNRNPA2B1 0.038 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.