Guide to the Human Genome
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Name: HNRNPA0 Sequence: fasta or formatted (305aa) NCBI GI: 5803036
Description:

heterogeneous nuclear ribonucleoprotein A0

Referenced in:

hnRNP

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         20           2
 C cysteine            1.0          3           1
 D aspartate           3.9         12           1
 E glutamate           4.3         13           2
 F phenylalanine       4.9         15           1
 G glycine            26.2         80           8
 H histidine           2.6          8           1
 I isoleucine          2.0          6           2
 K lysine              5.9         18           2
 L leucine             3.3         10           1
 M methionine          1.0          3           1
 N asparagine          3.6         11           1
 P proline             2.3          7           1
 Q glutamine           3.3         10           1
 R arginine            5.2         16           1
 S serine              9.8         30           2
 T threonine           2.3          7           1
 V valine              6.6         20           4
 W tryptophan          0.3          1           1
 Y tyrosine            4.9         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heterogeneous nuclear ribonucleoprotein A0 
HNRNPA3               0.493   heterogeneous nuclear ribonucleoprotein A3 
HNRNPA2B1             0.466   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA2B1             0.466   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
HNRNPA1               0.459   heterogeneous nuclear ribonucleoprotein A1 isoform b...
HNRNPA1               0.451   heterogeneous nuclear ribonucleoprotein A1 isoform a ...
HNRNPA1L2             0.444   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1L2             0.444   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
LOC120364             0.402   PREDICTED: similar to heterogeneous nuclear ribonucl...
LOC120364             0.402   PREDICTED: similar to heterogeneous nuclear ribonucl...
LOC120364             0.400   PREDICTED: similar to heterogeneous nuclear ribonuc...
HNRNPAB               0.239   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRPDL                0.239   heterogeneous nuclear ribonucleoprotein D-like [Homo...
HNRNPD                0.234   heterogeneous nuclear ribonucleoprotein D isoform a ...
HNRNPD                0.234   heterogeneous nuclear ribonucleoprotein D isoform b ...
MSI2                  0.212   musashi 2 isoform a 
MSI2                  0.206   musashi 2 isoform b 
MSI1                  0.201   musashi 1 
HNRNPAB               0.201   heterogeneous nuclear ribonucleoprotein A/B isoform ...
DAZAP1                0.183   DAZ associated protein 1 isoform a 
DAZAP1                0.183   DAZ associated protein 1 isoform b 
HNRNPD                0.181   heterogeneous nuclear ribonucleoprotein D isoform c ...
HNRNPD                0.181   heterogeneous nuclear ribonucleoprotein D isoform d ...
KRT10                 0.129   keratin 10 
TAF15                 0.126   TBP-associated factor 15 isoform 2 
TAF15                 0.126   TBP-associated factor 15 isoform 1 
KRT9                  0.124   keratin 9 
FAM98B                0.121   family with sequence similarity 98, member B isofor...
LOR                   0.119   loricrin 
NCL                   0.118   nucleolin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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