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Search of human proteins with 31542493
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31542493 D site of albumin promoter (albumin D-box) binding
protein [Homo sapiens]
(325 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31542493 D site of albumin promoter (albumin D-box) binding p... 662 0.0
gi|4504421 hepatic leukemia factor [Homo sapiens] 248 5e-66
gi|223972670 thyrotrophic embryonic factor isoform 2 [Homo sapiens] 221 5e-58
gi|4507431 thyrotrophic embryonic factor isoform 1 [Homo sapiens] 221 5e-58
gi|239751641 PREDICTED: hypothetical protein XP_002347943 [Homo ... 66 4e-11
gi|52630429 nuclear factor, interleukin 3 regulated [Homo sapiens] 59 6e-09
gi|122937321 UNC homeobox [Homo sapiens] 57 3e-08
gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens] 56 4e-08
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] 55 8e-08
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 54 1e-07
gi|50511941 EMI domain containing 1 [Homo sapiens] 54 2e-07
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 52 6e-07
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 52 7e-07
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 52 7e-07
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 52 7e-07
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 51 2e-06
gi|116235472 SH3-domain GRB2-like (endophilin) interacting prote... 51 2e-06
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 50 4e-06
gi|163965366 nascent polypeptide-associated complex alpha subuni... 50 4e-06
gi|110832843 TBP-associated factor 4 [Homo sapiens] 49 5e-06
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 49 5e-06
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 49 5e-06
gi|33286446 opioid growth factor receptor [Homo sapiens] 49 6e-06
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 49 6e-06
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 49 6e-06
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 49 6e-06
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 49 6e-06
gi|194363725 SWI/SNF-related matrix-associated actin-dependent r... 49 6e-06
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 49 8e-06
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 48 1e-05
>gi|31542493 D site of albumin promoter (albumin D-box) binding
protein [Homo sapiens]
Length = 325
Score = 662 bits (1707), Expect = 0.0
Identities = 325/325 (100%), Positives = 325/325 (100%)
Query: 1 MARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPA 60
MARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPA
Sbjct: 1 MARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPA 60
Query: 61 ATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLD 120
ATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLD
Sbjct: 61 ATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLD 120
Query: 121 AFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASG 180
AFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASG
Sbjct: 121 AFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASG 180
Query: 181 HRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRFSEEELKPQPI 240
HRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRFSEEELKPQPI
Sbjct: 181 HRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRFSEEELKPQPI 240
Query: 241 MKKARKIQVPEEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALLRQE 300
MKKARKIQVPEEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALLRQE
Sbjct: 241 MKKARKIQVPEEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALLRQE 300
Query: 301 VVAVRQELSHYRAVLSRYQAQHGAL 325
VVAVRQELSHYRAVLSRYQAQHGAL
Sbjct: 301 VVAVRQELSHYRAVLSRYQAQHGAL 325
>gi|4504421 hepatic leukemia factor [Homo sapiens]
Length = 295
Score = 248 bits (633), Expect = 5e-66
Identities = 131/239 (54%), Positives = 171/239 (71%), Gaps = 9/239 (3%)
Query: 94 VPAPGLLAPLLWERTLPF-GD---VEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPA 149
VP L P LW++TLP+ GD +EY+DL+ FL E+G+PPSP SP P P PA
Sbjct: 59 VPQSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIPPSPSQHDH-SPHP-PGLQPA 116
Query: 150 PSPGPGSCGSASPRSSPGHAPARAALGTASGHRAGL---TSRDTPSPVDPDTVEVLMTFE 206
S P +S S+P H + S R G +R+TPSP+DPDT++V + +E
Sbjct: 117 SSAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYE 176
Query: 207 PDPADLALSSIPGHETFDPRRHRFSEEELKPQPIMKKARKIQVPEEQKDEKYWSRRYKNN 266
PDPADLALSSIPG E FDPR+ +FSEEELKPQP++KKARK+ +P++ KD+KYW+RR KNN
Sbjct: 177 PDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFIPDDLKDDKYWARRRKNN 236
Query: 267 EAAKRSRDARRLKENQISVRAAFLEKENALLRQEVVAVRQELSHYRAVLSRYQAQHGAL 325
AAKRSRDARRLKENQI++RA+FLEKEN+ LRQEV +R+EL + +L++Y+A+HG L
Sbjct: 237 MAAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKNILAKYEARHGPL 295
>gi|223972670 thyrotrophic embryonic factor isoform 2 [Homo sapiens]
Length = 273
Score = 221 bits (564), Expect = 5e-58
Identities = 118/232 (50%), Positives = 157/232 (67%), Gaps = 12/232 (5%)
Query: 100 LAPLLWERTLPFGD----VEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPG 155
L P +W++T+P+ +EY+DLD FLLE+G+P SP P S
Sbjct: 48 LMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLLPVAELEGKES---A 104
Query: 156 SCGSASPRSSPG--HAPARAALGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLA 213
S +ASP SS P+ T S R+TPSP+DP+ VEV + F PDPADL
Sbjct: 105 SSSTASPPSSSTAIFQPSETVSSTESSLEK---ERETPSPIDPNCVEVDVNFNPDPADLV 161
Query: 214 LSSIPGHETFDPRRHRFSEEELKPQPIMKKARKIQVPEEQKDEKYWSRRYKNNEAAKRSR 273
LSS+PG E F+PR+H+F+EE+LKPQP++KKA+K+ VP+EQKDEKYW+RR KNN AAKRSR
Sbjct: 162 LSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSR 221
Query: 274 DARRLKENQISVRAAFLEKENALLRQEVVAVRQELSHYRAVLSRYQAQHGAL 325
DARRLKENQI++RAAFLEKEN LR EV +R+E+ + ++S+Y+ ++G L
Sbjct: 222 DARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL 273
>gi|4507431 thyrotrophic embryonic factor isoform 1 [Homo sapiens]
Length = 303
Score = 221 bits (564), Expect = 5e-58
Identities = 118/232 (50%), Positives = 157/232 (67%), Gaps = 12/232 (5%)
Query: 100 LAPLLWERTLPFGD----VEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPG 155
L P +W++T+P+ +EY+DLD FLLE+G+P SP P S
Sbjct: 78 LMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLLPVAELEGKES---A 134
Query: 156 SCGSASPRSSPG--HAPARAALGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLA 213
S +ASP SS P+ T S R+TPSP+DP+ VEV + F PDPADL
Sbjct: 135 SSSTASPPSSSTAIFQPSETVSSTESSLEK---ERETPSPIDPNCVEVDVNFNPDPADLV 191
Query: 214 LSSIPGHETFDPRRHRFSEEELKPQPIMKKARKIQVPEEQKDEKYWSRRYKNNEAAKRSR 273
LSS+PG E F+PR+H+F+EE+LKPQP++KKA+K+ VP+EQKDEKYW+RR KNN AAKRSR
Sbjct: 192 LSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSR 251
Query: 274 DARRLKENQISVRAAFLEKENALLRQEVVAVRQELSHYRAVLSRYQAQHGAL 325
DARRLKENQI++RAAFLEKEN LR EV +R+E+ + ++S+Y+ ++G L
Sbjct: 252 DARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL 303
>gi|239751641 PREDICTED: hypothetical protein XP_002347943 [Homo
sapiens]
Length = 369
Score = 66.2 bits (160), Expect = 4e-11
Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 239 PIMKKARKIQVPEEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALLR 298
P +++ R+ +PEE+KD YW +R KNNEAAKRSR+ RRL + I R A L +ENALL+
Sbjct: 61 PSIRRQREF-MPEEKKDTVYWEKRRKNNEAAKRSREKRRLNDAAIEGRLAALMEENALLK 119
Query: 299 QEVVAVR 305
E+ A++
Sbjct: 120 GELKALK 126
>gi|52630429 nuclear factor, interleukin 3 regulated [Homo sapiens]
Length = 462
Score = 58.9 bits (141), Expect = 6e-09
Identities = 26/57 (45%), Positives = 41/57 (71%)
Query: 249 VPEEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALLRQEVVAVR 305
+P+E+KD YW +R KNNEAAKRSR+ RRL + + + L +ENA L+ E+++++
Sbjct: 67 IPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELLSLK 123
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 56.6 bits (135), Expect = 3e-08
Identities = 45/127 (35%), Positives = 56/127 (44%), Gaps = 25/127 (19%)
Query: 59 PAATTPGPGLETAGPADAPAGAVVG-GGSP-----RGRPGPVPAPGLLAPLLWERTLPFG 112
P P P + A PA A GA G GG+P R P V +PG AP PF
Sbjct: 406 PKDAPPAPAVPPAPPAQASFGAFSGPGGAPDSAFARRSPDAVASPGAPAPA----PAPFR 461
Query: 113 DVEYVDLDAFLLEHG---------LPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPR 163
D+ A E G P+PPPP PSP P P R P+P+ P +CG P
Sbjct: 462 DLA----SAAATEGGGGDCADAGTAGPAPPPPA-PSPRPGP-RPPSPAEEPATCGVPEPG 515
Query: 164 SSPGHAP 170
++ G +P
Sbjct: 516 AAAGPSP 522
Score = 36.2 bits (82), Expect = 0.041
Identities = 28/97 (28%), Positives = 35/97 (36%), Gaps = 18/97 (18%)
Query: 129 PPSPPPPG--GPSPEPSPARTPAPS-----PGPGSC---------GSASPRSSPGHAPAR 172
PP PPPP GP S A AP+ P PG+C A P+ PG +
Sbjct: 246 PPEPPPPAAKGPGAHASGAAGTAPAPPGEPPAPGTCDPAFYPSQRSGAGPQPRPGRPADK 305
Query: 173 AALGTASGHRAGLTSRDTPS--PVDPDTVEVLMTFEP 207
A G R P +VE L++ P
Sbjct: 306 DAASCGPGAAVAAVERGAAGLPKASPFSVESLLSDSP 342
Score = 30.8 bits (68), Expect = 1.7
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 126 HGLPPSPPPPGGPSPEPSPARTPAP-SPGPGSCGSASPRSS---PGHAPARAALGTA--S 179
H P S GG P P P P + GPG+ S + ++ PG PA A
Sbjct: 228 HSAPSSDSDSGGGGLSPEPPEPPPPAAKGPGAHASGAAGTAPAPPGEPPAPGTCDPAFYP 287
Query: 180 GHRAGLTSRDTPS-PVDPD 197
R+G + P P D D
Sbjct: 288 SQRSGAGPQPRPGRPADKD 306
Score = 28.5 bits (62), Expect = 8.5
Identities = 36/120 (30%), Positives = 45/120 (37%), Gaps = 26/120 (21%)
Query: 54 RKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGD 113
RKAA AA GL+ A ++G G LL+ T P G
Sbjct: 345 RKAASNAAAAAAAGLDFAPGLPCAPRTLIGKGHF---------------LLYPITQPLGF 389
Query: 114 VEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARA 173
+ + L+ G P P P P+PA PAP P S G+ S PG AP A
Sbjct: 390 L----VPQAALKGGAGLEPAPKDAP---PAPAVPPAP-PAQASFGAF---SGPGGAPDSA 438
>gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens]
Length = 345
Score = 56.2 bits (134), Expect = 4e-08
Identities = 78/303 (25%), Positives = 116/303 (38%), Gaps = 61/303 (20%)
Query: 41 PKEPASCLLKEKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPG-- 98
P+ PA L + + A+ + P LE G APA A P P PAP
Sbjct: 56 PRPPAGELGSIGDHERAIDFS----PYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASS 111
Query: 99 -----LLAPLLWE--------RTLPFGDVEYVDLDA---------FLLEHGLPPSPPPPG 136
L+ L + + +G V L A F H PP PPPP
Sbjct: 112 GQHHDFLSDLFSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPA 171
Query: 137 G----PSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALG---TASGHRAGLTSRD 189
P EP+ + + PG G A + +A RA LG SG L++
Sbjct: 172 ELKAEPGFEPADCKRKEEAGAPG--GGAGMAAGFPYA-LRAYLGYQAVPSGSSGSLSTSS 228
Query: 190 TPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRFSEEELKPQPIMKKARKIQV 249
+ SP P T P PAD P ++ P + KA+K
Sbjct: 229 SSSP--PGT--------PSPADAKA----------PPTACYAGAAPAPSQVKSKAKKTV- 267
Query: 250 PEEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALLRQEVVAVRQELS 309
++ ++Y RR +NN A ++SRD +++ + + L EN L+++V + +ELS
Sbjct: 268 --DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 325
Query: 310 HYR 312
R
Sbjct: 326 TLR 328
Score = 31.2 bits (69), Expect = 1.3
Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 11/105 (10%)
Query: 128 LPPSPPPPGGPSPEPS----PARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASGHRA 183
LP PPPP S E + A A + G + +A P + PG P LG+ H
Sbjct: 12 LPLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPAGELGSIGDHER 71
Query: 184 GLT----SRDTPSPVDPDTVEVLMTFE---PDPADLALSSIPGHE 221
+ +P P TFE P PA SS H+
Sbjct: 72 AIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHD 116
>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
Length = 411
Score = 55.1 bits (131), Expect = 8e-08
Identities = 55/190 (28%), Positives = 69/190 (36%), Gaps = 32/190 (16%)
Query: 11 APLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEK------ERKAALPAATTP 64
APL+ A P G + G EP C L + + +PAA +P
Sbjct: 44 APLVPAASASAPQRGPS---------GILPAAEPTICSLHQAWGGPGCRAQKGIPAALSP 94
Query: 65 GPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAFLL 124
GPG PA P A + G P PGP+P P + P +P V +
Sbjct: 95 GPG---PIPAPIPGPAQIPGPLPGSIPGPIPGPAQI-PSPIPAPIPGPISGPVQIPGPFR 150
Query: 125 EHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASGHRAG 184
P P P GP+P P P P P PG P +PG P G SG G
Sbjct: 151 G----PIPGPISGPAPIPGPISGPFSGPNPGPI----PGPNPGPIP-----GPISGPIPG 197
Query: 185 LTSRDTPSPV 194
S P P+
Sbjct: 198 PISVPIPGPI 207
Score = 45.1 bits (105), Expect = 9e-05
Identities = 52/228 (22%), Positives = 74/228 (32%), Gaps = 57/228 (25%)
Query: 64 PGP-GLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAF 122
PGP + GP P + G +P PGP+P P
Sbjct: 196 PGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGP------------------------- 230
Query: 123 LLEHGLPPSPPPPGGPSPE--------------------PSPARTPAPS--PGPGSCGSA 160
+ P P P GP+P PSPA+ P P GPG S
Sbjct: 231 ISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSP 290
Query: 161 SPRSSPGHAPARA-ALGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPG 219
SPG P A LG SG +G P P L PD +D +P
Sbjct: 291 GRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDF----LPD 346
Query: 220 HETFDPRRHRFSEEELKPQPIMKKARKIQVPEEQKDEKYWSRRYKNNE 267
+ F F+E L P+ + + Q+ + +++ ++
Sbjct: 347 TQLFP----HFTELLLPLDPLEGSSVSTMTSQYQEGDDSMGKKHSGSQ 390
Score = 43.1 bits (100), Expect = 3e-04
Identities = 39/134 (29%), Positives = 47/134 (35%), Gaps = 31/134 (23%)
Query: 64 PGPGLETA---GPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLD 120
PGP A GP P G P PGP+P P + P+ ++P
Sbjct: 154 PGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGP-ISGPIPGPISVPIPG------- 205
Query: 121 AFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASG 180
P P P GP P+P P P PGP S +PG P G SG
Sbjct: 206 ---------PIPGPISGPISGPNPGPIPGPIPGPIS------GPNPGPIP-----GPISG 245
Query: 181 HRAGLTSRDTPSPV 194
GL P P+
Sbjct: 246 PNPGLIPGPIPGPI 259
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 54.3 bits (129), Expect = 1e-07
Identities = 36/108 (33%), Positives = 39/108 (36%), Gaps = 33/108 (30%)
Query: 83 GGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEP 142
GGG P PG PAPG PP PPPP P +P
Sbjct: 6 GGGRPGESPGATPAPG------------------------------PPPPPPPAPPQQQP 35
Query: 143 SPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASGHRAGLTSRDT 190
P PAP PGPG P + P A G G R L SRD+
Sbjct: 36 PPPPPPAPPPGPGPAPPQHPPRAEALPPEAADEG---GPRGRLRSRDS 80
Score = 37.7 bits (86), Expect = 0.014
Identities = 38/119 (31%), Positives = 45/119 (37%), Gaps = 18/119 (15%)
Query: 64 PGPGLETAGPAD----APAGAVVGGGSPRGRP-GPVPAPGLLAPLLWERTLPFGDVEYVD 118
PGP A P +P GA +PR P G +PA L P L R L +
Sbjct: 763 PGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRAS-RPLS 821
Query: 119 LDAFLLEHGLP---PSPPPPGGPSPEPSP---ARTPAPSP------GPGSCGSASPRSS 165
L HG P S P +P P AR APSP PG+ G P+ S
Sbjct: 822 ASQPSLPHGAPGPAASTRPASSSTPRLGPTPAARAAAPSPDRRDSASPGAAGGLDPQDS 880
Score = 34.7 bits (78), Expect = 0.12
Identities = 46/162 (28%), Positives = 51/162 (31%), Gaps = 58/162 (35%)
Query: 85 GSPR--GRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEP 142
GSPR RP P PAP +P G PP PPG P+
Sbjct: 753 GSPRLVRRPPPGPAPAAASP------------------------GPPPPASPPGAPASPR 788
Query: 143 SPARTP------APSPGPGSCG----------SASPRSSPGHAPARAA-----------L 175
+P +P AP GP SAS S P AP AA L
Sbjct: 789 APRTSPYGGLPAAPLAGPALPARRLSRASRPLSASQPSLPHGAPGPAASTRPASSSTPRL 848
Query: 176 GTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSI 217
G RA S D P L DP D A S +
Sbjct: 849 GPTPAARAAAPSPDRRDSASPGAAGGL-----DPQDSARSRL 885
Score = 32.7 bits (73), Expect = 0.45
Identities = 39/139 (28%), Positives = 48/139 (34%), Gaps = 26/139 (18%)
Query: 63 TPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAP-------GLLAPLLWERTLPFGDVE 115
TP PG P P P PGP PAP L P + P G +
Sbjct: 17 TPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHPPRAEALPPEAADEGGPRGRLR 76
Query: 116 YVDLDAFLLEHGLPPSP----PPPGGPS-------PEPSPARTPAPSPGPG---SCGSAS 161
D G P +P G P+ P+ SPA P+ GP SC A+
Sbjct: 77 SRDSSC-----GRPGTPGAASTAKGSPNGECGRGEPQCSPAGPEGPARGPKVSFSCRGAA 131
Query: 162 PRSSPGHAPARAALGTASG 180
+PG PA A +G
Sbjct: 132 SGPAPGPGPAEEAGSEEAG 150
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 53.5 bits (127), Expect = 2e-07
Identities = 56/201 (27%), Positives = 65/201 (32%), Gaps = 18/201 (8%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSL--LQGTSKPKEPASCLLKEKERKAALPAA 61
P + PAPL PA PG G L L G + PK A + +
Sbjct: 170 PATPEDPAPLWGPPPAQGSPGDGGLQDQVGAWGLPGPTGPKGDAGS-------RGPMGMR 222
Query: 62 TTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPL--LWERTLPFGDVEYVDL 119
PGP P A A G P G PGP PG AP+ R GD +
Sbjct: 223 GPPGPQGPPGSPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPHARISQHGDPLLSNT 282
Query: 120 DAFLLEHGL-----PPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAA 174
H PP PP P GP P P P G G P+ GH +
Sbjct: 283 FTETNNHWPQGPTGPPGPPGPMGPPGPPGPTGVPGSPGHIGPPGPTGPKGISGHPGEKGE 342
Query: 175 LGTAS--GHRAGLTSRDTPSP 193
G G + R P P
Sbjct: 343 RGLRGEPGPQGSAGQRGEPGP 363
Score = 29.6 bits (65), Expect = 3.8
Identities = 27/100 (27%), Positives = 35/100 (35%), Gaps = 26/100 (26%)
Query: 123 LLEHGLPPSPPPPGGPSP--EPSPAR----------------TPAPSPGPGSCGSASP-- 162
++E +PP+P P P+P P PA+ P P+ G GS P
Sbjct: 161 VIEQPVPPTPATPEDPAPLWGPPPAQGSPGDGGLQDQVGAWGLPGPTGPKGDAGSRGPMG 220
Query: 163 -RSSPG-----HAPARAALGTASGHRAGLTSRDTPSPVDP 196
R PG +P RA G R P P P
Sbjct: 221 MRGPPGPQGPPGSPGRAGAVGTPGERGPPGPPGPPGPPGP 260
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 52.4 bits (124), Expect = 6e-07
Identities = 56/194 (28%), Positives = 72/194 (37%), Gaps = 37/194 (19%)
Query: 64 PGPGLETAGPADA---PAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLD 120
P PG+ +A PA + PA G P PGP P P P + + P G
Sbjct: 117 PAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTP---PPAV--TSAPPGAPPPTPPS 171
Query: 121 AFLLEHGLPPSPPPPGGPSPEPS--PARTPAPSPGPGSCGSASPRSSPGHAPARA-ALGT 177
+ G+P +PP GGP P P+ P P P GPG G + G P L T
Sbjct: 172 S-----GVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLST 226
Query: 178 ASG-----HRAGLTSR--------------DTPSPVDPD--TVEVLMTFEPDPADLALSS 216
G HR G R P P P + E + E A+L+L
Sbjct: 227 PGGHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLR 286
Query: 217 IPGHETFDPRRHRF 230
PG +T+ R F
Sbjct: 287 RPGEKTYTQRCRLF 300
Score = 39.3 bits (90), Expect = 0.005
Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 129 PPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASGHRAGLT-- 186
PP PPP P P P P + P P P PG AP + AS T
Sbjct: 78 PPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPP 137
Query: 187 -------SRDTPSPVDPDTVEVLMTFEPDP 209
S P+P P V P P
Sbjct: 138 TSGAPPGSGPGPTPTPPPAVTSAPPGAPPP 167
Score = 31.6 bits (70), Expect = 1.0
Identities = 22/79 (27%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 128 LPPSPP-------PPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARA-ALGTAS 179
+PP PP PP P P+ P P P P P P P A G A
Sbjct: 60 IPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAP 119
Query: 180 GHRAGLTSRDTPSPVDPDT 198
G + + + P P T
Sbjct: 120 GVGSAPPASSSAPPATPPT 138
Score = 29.3 bits (64), Expect = 5.0
Identities = 22/92 (23%), Positives = 30/92 (32%), Gaps = 11/92 (11%)
Query: 9 TPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKE-----------RKAA 57
TP P + P G PP G+ + P P + + +
Sbjct: 152 TPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGK 211
Query: 58 LPAATTPGPGLETAGPADAPAGAVVGGGSPRG 89
+P PG G + P P GGG PRG
Sbjct: 212 MPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRG 243
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 52.0 bits (123), Expect = 7e-07
Identities = 42/145 (28%), Positives = 55/145 (37%), Gaps = 28/145 (19%)
Query: 39 SKPKEPASCLLKEKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPG 98
S P EPA+ E L A P + PA P V +P P PV AP
Sbjct: 105 SPPLEPAA------ESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAP- 157
Query: 99 LLAPLLWERTLPFGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCG 158
+ AP+ L P+P P P+P P+P PAP+P P
Sbjct: 158 VAAPVAVAV--------------------LAPAPAPAPAPAPAPAPVAAPAPAPAPAPAP 197
Query: 159 SASPRSSPGHAPARAA-LGTASGHR 182
+ +P +P AP +A G G R
Sbjct: 198 APAPAPAPDAAPQESAEQGANQGQR 222
Score = 38.5 bits (88), Expect = 0.008
Identities = 45/192 (23%), Positives = 61/192 (31%), Gaps = 27/192 (14%)
Query: 10 PAPLLLGGPAGTP--PGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATTPGPG 67
P P+ + P P +L GL + PA A A P P
Sbjct: 95 PRPVAVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAP- 153
Query: 68 LETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAFLLEHG 127
A P AP V +P P P PAP AP+ P
Sbjct: 154 --VAAPVAAPVAVAVLAPAPAPAPAPAPAP---APVAAPAPAP----------------A 192
Query: 128 LPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHA--PARAALGTASGHRAGL 185
P+P P P+P+ +P + G G P + H+ R A GTA+ G
Sbjct: 193 PAPAPAPAPAPAPDAAPQESAEQGANQGQRGQ-EPLADQLHSGISGRPAAGTAAASANGA 251
Query: 186 TSRDTPSPVDPD 197
+ P+ D
Sbjct: 252 AIKKLSGPLISD 263
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 52.0 bits (123), Expect = 7e-07
Identities = 42/145 (28%), Positives = 55/145 (37%), Gaps = 28/145 (19%)
Query: 39 SKPKEPASCLLKEKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPG 98
S P EPA+ E L A P + PA P V +P P PV AP
Sbjct: 105 SPPLEPAA------ESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAP- 157
Query: 99 LLAPLLWERTLPFGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCG 158
+ AP+ L P+P P P+P P+P PAP+P P
Sbjct: 158 VAAPVAVAV--------------------LAPAPAPAPAPAPAPAPVAAPAPAPAPAPAP 197
Query: 159 SASPRSSPGHAPARAA-LGTASGHR 182
+ +P +P AP +A G G R
Sbjct: 198 APAPAPAPDAAPQESAEQGANQGQR 222
Score = 38.5 bits (88), Expect = 0.008
Identities = 45/192 (23%), Positives = 61/192 (31%), Gaps = 27/192 (14%)
Query: 10 PAPLLLGGPAGTP--PGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATTPGPG 67
P P+ + P P +L GL + PA A A P P
Sbjct: 95 PRPVAVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAP- 153
Query: 68 LETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAFLLEHG 127
A P AP V +P P P PAP AP+ P
Sbjct: 154 --VAAPVAAPVAVAVLAPAPAPAPAPAPAP---APVAAPAPAP----------------A 192
Query: 128 LPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHA--PARAALGTASGHRAGL 185
P+P P P+P+ +P + G G P + H+ R A GTA+ G
Sbjct: 193 PAPAPAPAPAPAPDAAPQESAEQGANQGQRGQ-EPLADQLHSGISGRPAAGTAAASANGA 251
Query: 186 TSRDTPSPVDPD 197
+ P+ D
Sbjct: 252 AIKKLSGPLISD 263
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 52.0 bits (123), Expect = 7e-07
Identities = 42/145 (28%), Positives = 55/145 (37%), Gaps = 28/145 (19%)
Query: 39 SKPKEPASCLLKEKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPG 98
S P EPA+ E L A P + PA P V +P P PV AP
Sbjct: 116 SPPLEPAA------ESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAP- 168
Query: 99 LLAPLLWERTLPFGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCG 158
+ AP+ L P+P P P+P P+P PAP+P P
Sbjct: 169 VAAPVAVAV--------------------LAPAPAPAPAPAPAPAPVAAPAPAPAPAPAP 208
Query: 159 SASPRSSPGHAPARAA-LGTASGHR 182
+ +P +P AP +A G G R
Sbjct: 209 APAPAPAPDAAPQESAEQGANQGQR 233
Score = 38.5 bits (88), Expect = 0.008
Identities = 45/192 (23%), Positives = 61/192 (31%), Gaps = 27/192 (14%)
Query: 10 PAPLLLGGPAGTP--PGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATTPGPG 67
P P+ + P P +L GL + PA A A P P
Sbjct: 106 PRPVAVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAP- 164
Query: 68 LETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAFLLEHG 127
A P AP V +P P P PAP AP+ P
Sbjct: 165 --VAAPVAAPVAVAVLAPAPAPAPAPAPAP---APVAAPAPAP----------------A 203
Query: 128 LPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHA--PARAALGTASGHRAGL 185
P+P P P+P+ +P + G G P + H+ R A GTA+ G
Sbjct: 204 PAPAPAPAPAPAPDAAPQESAEQGANQGQRGQ-EPLADQLHSGISGRPAAGTAAASANGA 262
Query: 186 TSRDTPSPVDPD 197
+ P+ D
Sbjct: 263 AIKKLSGPLISD 274
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 50.8 bits (120), Expect = 2e-06
Identities = 73/258 (28%), Positives = 88/258 (34%), Gaps = 55/258 (21%)
Query: 2 ARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAA 61
A P DR P P GP G PP A G + P+ P P
Sbjct: 210 AVPGGDRFPGP---AGPGGPPPPFPA---------GQTPPRPPLGPPGPPGPPGPPPPGQ 257
Query: 62 TTPGPGLETAGPADAPAGAVVGGGSPRGRP--GPVPAPGLLAPLLWERTLPFGDVEYVDL 119
P P D P V+ G P G+P GP+P PG P+
Sbjct: 258 VLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLP-PGPPPPVPG-------------- 302
Query: 120 DAFLLEHGLPPSPPPPG-GPSPEPS--PARTPAPSPGPGSCGSAS--PRSSPGHAPARAA 174
+G PP PPPP GP P P P R P P P + P PG P
Sbjct: 303 ------YGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPH 356
Query: 175 LGTA---SGHRAGLTSRDT--PSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHR 229
+ A +G+ + D+ P P DP P P D PG E D R
Sbjct: 357 VNPAFFPPPTNSGMPTSDSRGPPPTDP-------YGRPPPYDRGDYGPPGRE-MDTARTP 408
Query: 230 FSEEELKPQPIMKKARKI 247
SE E + IM + R I
Sbjct: 409 LSEAEF--EEIMNRNRAI 424
>gi|116235472 SH3-domain GRB2-like (endophilin) interacting protein
1 [Homo sapiens]
Length = 828
Score = 50.8 bits (120), Expect = 2e-06
Identities = 68/257 (26%), Positives = 93/257 (36%), Gaps = 27/257 (10%)
Query: 59 PAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAP-GLLAPLLWERTLP------F 111
P P PAD+PA +G P G PGP P +L+PL E F
Sbjct: 329 PREKVVSPPATPDNPADSPAPGPLGPPGPTGPPGPPGPPRNVLSPLNLEEVQKKVAEQTF 388
Query: 112 GDVEYVDLDAFLLEHGL-----PPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSP 166
+Y++ + + GL PP PPPP + SP P PGPG+ AS + P
Sbjct: 389 IKDDYLETISSPKDFGLGQRATPPPPPPPTYRTVVSSPG--PGSGPGPGTTSGASSPARP 446
Query: 167 GH--APARAALGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFD 224
P R+ R SR P P +V F P + SS P
Sbjct: 447 ATPLVPCRSTTPPPPPPRP--PSRPKLPPGKPGVGDVSRPFSP---PIHSSSPP---PIA 498
Query: 225 PRRHRFSEEELKPQPIMKKARKIQVPEEQKDEKYWSRR--YKNNEAAKRSRDARRL-KEN 281
P S + + A V EQ ++ R Y E + R + ++
Sbjct: 499 PLARAESTSSISSTNSLSAATTPTVENEQPSLVWFDRGKFYLTFEGSSRGPSPLTMGAQD 558
Query: 282 QISVRAAFLEKENALLR 298
+ V AAF E NA +
Sbjct: 559 TLPVAAAFTETVNAYFK 575
Score = 28.9 bits (63), Expect = 6.5
Identities = 38/145 (26%), Positives = 50/145 (34%), Gaps = 39/145 (26%)
Query: 92 GPVPAPGLLAPLLWERTLPFGDVEYVDLDAFLLEHGLPPSPP------PPGGPSPEPSPA 145
GPV +P +A E+ + F D EH P P PP P +PA
Sbjct: 296 GPVLSPKSVAVNAEEKWVHFSDTSP--------EHVTPELTPREKVVSPPATPD---NPA 344
Query: 146 RTPAPSP--GPGSCGSASPRSSPGHAPARAAL-------------------GTASGHRAG 184
+PAP P PG G P P + + L +S G
Sbjct: 345 DSPAPGPLGPPGPTGPPGPPGPPRNVLSPLNLEEVQKKVAEQTFIKDDYLETISSPKDFG 404
Query: 185 LTSRDTPSPVDPDTVEVLMTFEPDP 209
L R TP P P T +++ P P
Sbjct: 405 LGQRATPPPPPPPTYRTVVS-SPGP 428
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 49.7 bits (117), Expect = 4e-06
Identities = 64/213 (30%), Positives = 82/213 (38%), Gaps = 19/213 (8%)
Query: 16 GGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATTPGPGL-ETAGPA 74
G A PP G L G SL T +P K KAA+P A L +GP
Sbjct: 327 GSAAPGPPRGPRLQGGGSL---TLQPDYAKYATFKAAALKAAVPRARRSANRLPRPSGPR 383
Query: 75 DAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAFLLEHGLPPSPPP 134
PA A SP G P PV + G + +P E D L PSP
Sbjct: 384 PRPAPARSPSQSPAGTPCPVLSLGARRGVTLPCPVP---AEAAPRDFCQRFPALEPSPRQ 440
Query: 135 PGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASGHRAGLTSRDTPSPV 194
P PAR P PSP + A P + P +AP AA G + + +R P+P+
Sbjct: 441 P--------PARAPRPSPDLPAPLDACPWAPPVYAPP-AAPGPYAAWTSSRPAR--PAPL 489
Query: 195 DPDTVEVL-MTFEPDPADLALSSIPGHETFDPR 226
T + P A S+ ETF+P+
Sbjct: 490 SHPTARAFQVPRRPGHAARRQFSVKMPETFNPQ 522
Score = 41.6 bits (96), Expect = 0.001
Identities = 37/134 (27%), Positives = 48/134 (35%), Gaps = 24/134 (17%)
Query: 86 SPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAFLLEHGLPPSP------PPPGGPS 139
+PRG P P G TL +Y A L+ +P + P P GP
Sbjct: 324 APRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAVPRARRSANRLPRPSGPR 383
Query: 140 PEPSPARTPAPSPGPGSC------------------GSASPRSSPGHAPARAALGTASGH 181
P P+PAR+P+ SP C A+PR PA
Sbjct: 384 PRPAPARSPSQSPAGTPCPVLSLGARRGVTLPCPVPAEAAPRDFCQRFPALEPSPRQPPA 443
Query: 182 RAGLTSRDTPSPVD 195
RA S D P+P+D
Sbjct: 444 RAPRPSPDLPAPLD 457
Score = 33.5 bits (75), Expect = 0.26
Identities = 51/196 (26%), Positives = 64/196 (32%), Gaps = 24/196 (12%)
Query: 64 PGPGLETAGPADAPAGAVV----GGGSPRGRPGPVPAPGLLAPLLWERTLP---FGDVEY 116
PGP P G V G G PRG P P P L + P F V
Sbjct: 186 PGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPR--TPRLARASPPGEPFMRVAP 243
Query: 117 VDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPG-PGSCGSASPRS----------S 165
L A P P P G E P P G PGS +AS R +
Sbjct: 244 PGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVN 303
Query: 166 PGHAPARAALGTASGHRAGLTSRDTPSPVDPDTVEV----LMTFEPDPADLALSSIPGHE 221
G P+R +L R R + +P P + +T +PD A A +
Sbjct: 304 RGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALK 363
Query: 222 TFDPRRHRFSEEELKP 237
PR R + +P
Sbjct: 364 AAVPRARRSANRLPRP 379
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 49.7 bits (117), Expect = 4e-06
Identities = 63/232 (27%), Positives = 76/232 (32%), Gaps = 22/232 (9%)
Query: 2 ARPVSDRTPAPLLLGGPAGTPP---GGGALLGLR-SLLQGTSKPKEPASCLLKEKERKAA 57
A P P P PA TPP GG A + + + P P + A
Sbjct: 932 ASPSPKGAPTP-----PAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAP 986
Query: 58 LP-AATTPGP--GLETAGPADAPAGAVVGGGSPRGRPGPVPAP-GLLAPLLWERTLPFGD 113
P AAT P P G T P AP V SP+G P P P G P P G
Sbjct: 987 TPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGS 1046
Query: 114 VEYVDLDAFLLEHGLPPSPPPPGGPS-------PEPSPARTPAPSPGPGSCGSASPRSSP 166
L P P GGP+ P P A P+P GP + P
Sbjct: 1047 PAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPP 1106
Query: 167 GHAPARAALGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIP 218
P G A+ G + TP+ P L T P A ++ P
Sbjct: 1107 AATPPSPKGGLATPPHKGAPT--TPAATPPSPKGGLATPPPKGAPTTPAATP 1156
Score = 44.3 bits (103), Expect = 1e-04
Identities = 58/201 (28%), Positives = 66/201 (32%), Gaps = 25/201 (12%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATT 63
P + P GGPA PP G + P L + A PA T
Sbjct: 1241 PTTPAATPPSPKGGPATPPPKGAPT-------PPAATPPSLKGGLATPPHKGAPNPAVVT 1293
Query: 64 PGP---GLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLD 120
P G T+ P AP SP+G PG P G P P G
Sbjct: 1294 PPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATT 1353
Query: 121 AFLLEHGLPPS----PPPP-------GGPS-PEPSPARTPA-PSPGPGSCGSASPRSSPG 167
PS P PP GGP+ PSP R PA PSP A SP
Sbjct: 1354 PSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPK 1413
Query: 168 HAPARAAL--GTASGHRAGLT 186
APA G A+ + LT
Sbjct: 1414 KAPATPVTREGAATPSKGDLT 1434
Score = 43.1 bits (100), Expect = 3e-04
Identities = 59/202 (29%), Positives = 77/202 (38%), Gaps = 27/202 (13%)
Query: 5 VSDRTPAPLLLGGPAG--TPPGG---------GALLGLRSL-LQGTSKPKEPASCLLKEK 52
VS +T P G AG TP G + L SL QG+
Sbjct: 801 VSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKDSPATTHSPTPPS 860
Query: 53 ERKAALPAATTP-GPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPF 111
+ A P+A TP P T P + P +VV P+ P PAP L + P
Sbjct: 861 PKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPA-TPAPKQAPALSMTSSSP- 918
Query: 112 GDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPA 171
A G+P SP P G P+P PA TP PSP G + SP+ +P P
Sbjct: 919 -----KKARATPAPKGIPASPSPKGAPTP---PAATP-PSP-KGGPATPSPKWAP--TPP 966
Query: 172 RAALGTASGHRAGLTSRDTPSP 193
A + G A + + P+P
Sbjct: 967 AATPPSPKGGPATPSPKGAPTP 988
Score = 42.4 bits (98), Expect = 6e-04
Identities = 63/192 (32%), Positives = 71/192 (36%), Gaps = 29/192 (15%)
Query: 18 PAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAAL--------PAATTPGP--G 67
PA TPP L +G P PA+ L K A PAAT P P G
Sbjct: 1036 PAATPPSPKGSPAATPLPKGA--PTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGG 1093
Query: 68 LETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPF---GDVEYVDLDAFLL 124
T P AP SP+G P G AP T P G A
Sbjct: 1094 PATPSPKGAPMPPAATPPSPKGGLATPPHKG--APTTPAATPPSPKGGLATPPPKGAPTT 1151
Query: 125 EHGLPPSPPPPGG---PSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASGH 181
PPSP GG P P+ +P TPA +P G A+P SP AP A T
Sbjct: 1152 PAATPPSPK--GGLATPPPKGAPT-TPAATPPSPKGGLATP--SPKGAPTTPA-ATPPSP 1205
Query: 182 RAGLTSRDTPSP 193
+ GL TPSP
Sbjct: 1206 KGGLA---TPSP 1214
Score = 42.4 bits (98), Expect = 6e-04
Identities = 57/198 (28%), Positives = 68/198 (34%), Gaps = 19/198 (9%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKA-ALPAAT 62
P + P GG A PP G + P P L + A PAAT
Sbjct: 1126 PTTPAATPPSPKGGLATPPPKGAPTTP-------AATPPSPKGGLATPPPKGAPTTPAAT 1178
Query: 63 TPGP--GLETAGPADAPAGAVVGGGSPRG---RPGPVPAPGLLAPLLWERTLPFGDVEYV 117
P P GL T P AP SP+G P P AP P + G
Sbjct: 1179 PPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAP--TTPAATPPSPKGGLATPS 1236
Query: 118 DLDAFLLEHGLPPSPPPPGGP-SPEPSPART-PAPSPGPGSCGSASPRSSPGHAPARAAL 175
A PPSP GGP +P P A T PA +P G A+P PA
Sbjct: 1237 PKGAPTTPAATPPSPK--GGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTP 1294
Query: 176 GTASGHRAGLTSRDTPSP 193
+ G A + P+P
Sbjct: 1295 PSPKGGPATSPPKGAPTP 1312
Score = 41.6 bits (96), Expect = 0.001
Identities = 57/199 (28%), Positives = 72/199 (36%), Gaps = 25/199 (12%)
Query: 18 PAGTPP---GGGALLGLRSL-LQGTSKPKEPASCLLKEKERKA-ALPAATTPGP--GLET 70
PA TPP GG A + + P P L + A PAAT P P GL T
Sbjct: 1175 PAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLAT 1234
Query: 71 AGPADAPAGAVVGGGSPRGRPGPVPAPGL-LAPLLWERTLPFGDVEYVDLDAFLLEHGLP 129
P AP SP+G P P G P +L G A P
Sbjct: 1235 PSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTP 1294
Query: 130 PSPP-------------PPGG--PSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAA 174
PSP PP PSP+ SP TP P P + + +P S G A
Sbjct: 1295 PSPKGGPATSPPKGAPTPPAATPPSPKGSPG-TPPPKGAP-TPPAVTPPSPKGTPTLPAT 1352
Query: 175 LGTASGHRAGLTSRDTPSP 193
++ G +S++ P+P
Sbjct: 1353 TPSSKGGPTTPSSKEGPTP 1371
Score = 38.1 bits (87), Expect = 0.011
Identities = 53/215 (24%), Positives = 75/215 (34%), Gaps = 22/215 (10%)
Query: 41 PKEPASCLLKEKER-----KAAL--PAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGP 93
P P + LL +K K AL PA T P P A P A A P
Sbjct: 1526 PIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAV 1585
Query: 94 VPAPGLLAPLLWERTLPFGDVEYVDLDAFLLEHGLPPSPPPPGG--PSPEPSPARTPAPS 151
P+ AP E +P +A P PP PSPE PA TPAP
Sbjct: 1586 TPSTYKGAPSPKELLIPPAVTSPSPKEA----------PTPPAVTPPSPEKGPA-TPAPK 1634
Query: 152 PGPGSCGSASPRSSPGHAPARAALGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPAD 211
P S +P S + A++ G S+ P+ P ++ ++ P P
Sbjct: 1635 GTPTS-PPVTPSSLKDSPTSPASVTCKMGATVPQASKGLPAKKGPTALKEVLV-APAPES 1692
Query: 212 LALSSIPGHETFDPRRHRFSEEELKPQPIMKKARK 246
+ + P + ++ + + P P K K
Sbjct: 1693 TPIITAPTRKGPQTKKSSATSPPICPDPSAKNGSK 1727
Score = 36.6 bits (83), Expect = 0.031
Identities = 64/224 (28%), Positives = 90/224 (40%), Gaps = 53/224 (23%)
Query: 1 MARPVSDRTPAPLLLGGPAGTPPGGGALLGL---RSLLQGTSKPKEPASCLLKEKERKAA 57
+A + P+P L PAGTPPG + G+ +L S PKE + E A
Sbjct: 726 LAPEIPKSVPSPSL--PPAGTPPGTKKVDGISHTSALAPVASSPKECPT------EDSGA 777
Query: 58 LPAATTPGPGLETAGPADAPAGAVVGGGSPR-----GRPGP-VPAPGLLAPL-------L 104
A++ G L + +P G V + R G GP P L +P+ L
Sbjct: 778 SATASSKGT-LTYLADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFL 836
Query: 105 WERTLPFGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEP-----------SPARTPAPS-- 151
E +L F + D+ H P P P G P+P P TP PS
Sbjct: 837 PENSLSFQGSK----DSPATTHS-PTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVV 891
Query: 152 --PGPGSCGSASPRSSPGHAPARAALGTASGHRAGLTSRDTPSP 193
P P G A+P +P APA ++ ++S +A R TP+P
Sbjct: 892 NLPFPKE-GPATP--APKQAPA-LSMTSSSPKKA----RATPAP 927
Score = 36.6 bits (83), Expect = 0.031
Identities = 54/198 (27%), Positives = 65/198 (32%), Gaps = 14/198 (7%)
Query: 59 PAATTPGP--GLETAGPADAPAGAVVGGGSPRGRPG-PVPAPGLLAPLLWERTLP-FGDV 114
PA T P P G P P V SP+ P PV G P + T P V
Sbjct: 1382 PAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPV 1441
Query: 115 EYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAA 174
A G P +P G P+ PA TP P + + SSP APA A
Sbjct: 1442 SLKKAPATSAPKGGPATPSSKGDPT---LPAVTPPSPKEPPAPKQVATSSSPKKAPATPA 1498
Query: 175 LGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRFSEEE 234
A A + S P P + +P L S T P+
Sbjct: 1499 PMGAPTLPAVIPSSPKEVPATPSSRR-----DPIAPTATLLSKKTPATLAPKEALIPPAM 1553
Query: 235 LKPQPIMKKARKIQVPEE 252
P P KK I P+E
Sbjct: 1554 TVPSP--KKTPAIPTPKE 1569
Score = 32.3 bits (72), Expect = 0.59
Identities = 36/144 (25%), Positives = 49/144 (34%), Gaps = 12/144 (8%)
Query: 59 PAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVD 118
PA T+P P PA P G +P + P P + L T P +
Sbjct: 1603 PAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMG 1662
Query: 119 LDAFLLEHGLPPSPPPPG------GPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPAR 172
GLP P P+PE +P T GP + S +SP P
Sbjct: 1663 ATVPQASKGLPAKKGPTALKEVLVAPAPESTPIITAPTRKGPQT--KKSSATSPPICPDP 1720
Query: 173 AALGTASGHRAGLTSRDTPSPVDP 196
+A + G S P+P+ P
Sbjct: 1721 SAKNGSKGP----LSTVAPAPLLP 1740
Score = 30.0 bits (66), Expect = 2.9
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 130 PSPPPPGGPSPEPSP---ARTPAPSPGPGSCGSAS-----PRSSPGHAPARAALGTA 178
P+ PPP P+P+ P A +P P P + S P+SS G A LGTA
Sbjct: 43 PTLPPPCSPAPQQCPLSAANQASPFPSPSTIASTPLEVPFPQSSSGTA---LPLGTA 96
Score = 29.3 bits (64), Expect = 5.0
Identities = 56/212 (26%), Positives = 70/212 (33%), Gaps = 34/212 (16%)
Query: 9 TPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATTPGPGL 68
TP L P GG A + P PA KE A AT+ P
Sbjct: 1439 TPVSLKKAPATSAPKGGPATPSSKG------DPTLPAVTPPSPKEPPAPKQVATSSSPKK 1492
Query: 69 ETAGPAD--APAGAVVGGGSPRGRPG-PVPAPGLLAP---LLWERTLPFGDVEYVDLDAF 122
A PA AP V SP+ P P +AP LL ++T +A
Sbjct: 1493 APATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKT----PATLAPKEAL 1548
Query: 123 LLEHGLPPSPPP-PGGPSPEPSPAR------------TP-----APSPGPGSCGSASPRS 164
+ PSP P P+P+ +PA TP APSP A
Sbjct: 1549 IPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSP 1608
Query: 165 SPGHAPARAALGTASGHRAGLTSRDTPSPVDP 196
SP AP A+ S + T +P P
Sbjct: 1609 SPKEAPTPPAVTPPSPEKGPATPAPKGTPTSP 1640
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 49.3 bits (116), Expect = 5e-06
Identities = 62/239 (25%), Positives = 84/239 (35%), Gaps = 35/239 (14%)
Query: 8 RTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPA-ATTPGP 66
R P G A P G G +KP PA+ + P PGP
Sbjct: 127 RPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGP 186
Query: 67 GLETAGP-----------------ADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTL 109
G + AGP A APA ++V G P P PA AP +T
Sbjct: 187 G-KPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPA----APGTVIQTP 241
Query: 110 PFGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHA 169
PF P +P PP P+P +PA P P P P A P P
Sbjct: 242 PFVGAAAPPA---------PAAPSPPAAPAPA-APAAAPPPPP-PAPATLARPPGHPAGP 290
Query: 170 PARA-ALGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRR 227
P A A+ + + G ++ P+P ++ +P P A + PG + P+R
Sbjct: 291 PTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKR 349
Score = 47.0 bits (110), Expect = 2e-05
Identities = 46/143 (32%), Positives = 50/143 (34%), Gaps = 12/143 (8%)
Query: 59 PAATTPGPGLETAGPADAPAG-AVVGGGSPRGRPGPVPAP-------GLLAPLLWERTLP 110
PAA P G A P PAG A GGG P+ RPGP P+P G P R P
Sbjct: 75 PAA--PAEGAPGAAPEPPPAGRARPGGGGPQ-RPGP-PSPRRPLVPAGPAPPAAKLRPPP 130
Query: 111 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAP 170
G P P P G P A PGPG P PG
Sbjct: 131 EGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPA 190
Query: 171 ARAALGTASGHRAGLTSRDTPSP 193
A T +G A L S +P
Sbjct: 191 GPGAAQTLNGSAALLNSHHAAAP 213
Score = 43.9 bits (102), Expect = 2e-04
Identities = 64/237 (27%), Positives = 81/237 (34%), Gaps = 34/237 (14%)
Query: 10 PAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALP---AATTPGP 66
PAP PA P A P PA L A P A P P
Sbjct: 250 PAPAAPSPPAAPAPAAPA---------AAPPPPPPAPATLARPPGHPAGPPTAAPAVPPP 300
Query: 67 GLE----TAGPADAPAGAVVGGGSPRGRPGP-----VPAPGLLAPLLWERTLPFGDVEYV 117
+AG A APA A G G+PGP PAPG+ A P V+
Sbjct: 301 AAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAES------PKRVVQAA 354
Query: 118 DLDAFLLEHGLPPSPPPPG--GPSPE---PSPARTPAPSPGPGSCGSASPRSSPGHAPAR 172
A L P S GP+ + PSPA P P+PG + + + +R
Sbjct: 355 PPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSR 414
Query: 173 AALGTASGHRAGLTSRDTPS--PVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRR 227
T SG RA LT P P + F+ P + + S G P++
Sbjct: 415 TPTATTSGIRATLTPTVLAPRLPQPPQNPTNIQNFQLPPGMVLVRSENGQLLMIPQQ 471
Score = 30.4 bits (67), Expect = 2.2
Identities = 32/98 (32%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 127 GLPPSPPPPGGP--SPEPSPARTPAPSPG----PGSCGSASPRSSPGHAPARAALGTASG 180
G P+ P G P +PEP PA P G PG P G AP A L
Sbjct: 72 GAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPE 131
Query: 181 HRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIP 218
AG + +PV P V EP PA A + P
Sbjct: 132 GSAG-----SCAPV-PAAAAVAAGPEPAPAGPAKPAGP 163
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 49.3 bits (116), Expect = 5e-06
Identities = 51/199 (25%), Positives = 67/199 (33%), Gaps = 21/199 (10%)
Query: 41 PKEPASCLLKEKERKAALPAATTPGPGLETAGPADAPAGAV--------VGGGSPRGRPG 92
P P SC + P GPG + +GA+ +G P+G PG
Sbjct: 1569 PAFPNSCTCTQDSVGPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPG 1628
Query: 93 PVPAPGLLAPLLWERTLPFGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEP--------SP 144
P GL P R GD L GLP P P G P P
Sbjct: 1629 PQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGDRGFTGKDGAMGP 1688
Query: 145 ARTPAPSPGPGSCGSASPRSSPGH-----APARAALGTASGHRAGLTSRDTPSPVDPDTV 199
P P PGS G P PG P + L G R + S++ V
Sbjct: 1689 RGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVARQVC 1748
Query: 200 EVLMTFEPDPADLALSSIP 218
E L++ + + + L+ IP
Sbjct: 1749 EQLISGQMNRFNQMLNQIP 1767
Score = 38.9 bits (89), Expect = 0.006
Identities = 37/110 (33%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 64 PGPGLETAGPADAPAGAVVGGG-SPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAF 122
PGP GP P A G P GRPG PG+ P ER LP E +
Sbjct: 1777 PGP----PGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPP-GERGLPGEKGERGTGSSG 1831
Query: 123 LLEHGLPPSPPPPG----GPSPEPSPARTPAPSPGPGSCGSASPRSSPGH 168
GLP P P G GP P P PG+ G P PG+
Sbjct: 1832 --PRGLPGPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGY 1879
Score = 34.7 bits (78), Expect = 0.12
Identities = 24/68 (35%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 129 PPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASGHRAGLTSR 188
PP PP G EP P P PG G R PG R GT S GL
Sbjct: 1782 PPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGER---GTGSSGPRGL--- 1835
Query: 189 DTPSPVDP 196
P P P
Sbjct: 1836 --PGPPGP 1841
Score = 32.0 bits (71), Expect = 0.77
Identities = 27/86 (31%), Positives = 30/86 (34%), Gaps = 12/86 (13%)
Query: 17 GPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAAT----TPGPGLETAG 72
GP G P G G S P E +K + LP T PGP
Sbjct: 1622 GPQGPPGPQGP--------NGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGP 1673
Query: 73 PADAPAGAVVGGGSPRGRPGPVPAPG 98
P D G PRG PGP +PG
Sbjct: 1674 PGDRGFTGKDGAMGPRGPPGPPGSPG 1699
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 49.3 bits (116), Expect = 5e-06
Identities = 51/199 (25%), Positives = 67/199 (33%), Gaps = 21/199 (10%)
Query: 41 PKEPASCLLKEKERKAALPAATTPGPGLETAGPADAPAGAV--------VGGGSPRGRPG 92
P P SC + P GPG + +GA+ +G P+G PG
Sbjct: 2733 PAFPNSCTCTQDSVGPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPG 2792
Query: 93 PVPAPGLLAPLLWERTLPFGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEP--------SP 144
P GL P R GD L GLP P P G P P
Sbjct: 2793 PQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGDRGFTGKDGAMGP 2852
Query: 145 ARTPAPSPGPGSCGSASPRSSPGH-----APARAALGTASGHRAGLTSRDTPSPVDPDTV 199
P P PGS G P PG P + L G R + S++ V
Sbjct: 2853 RGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVARQVC 2912
Query: 200 EVLMTFEPDPADLALSSIP 218
E L++ + + + L+ IP
Sbjct: 2913 EQLISGQMNRFNQMLNQIP 2931
Score = 38.9 bits (89), Expect = 0.006
Identities = 37/110 (33%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 64 PGPGLETAGPADAPAGAVVGGG-SPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAF 122
PGP GP P A G P GRPG PG+ P ER LP E +
Sbjct: 2941 PGP----PGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPP-GERGLPGEKGERGTGSSG 2995
Query: 123 LLEHGLPPSPPPPG----GPSPEPSPARTPAPSPGPGSCGSASPRSSPGH 168
GLP P P G GP P P PG+ G P PG+
Sbjct: 2996 --PRGLPGPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGY 3043
Score = 34.7 bits (78), Expect = 0.12
Identities = 24/68 (35%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 129 PPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASGHRAGLTSR 188
PP PP G EP P P PG G R PG R GT S GL
Sbjct: 2946 PPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGER---GTGSSGPRGL--- 2999
Query: 189 DTPSPVDP 196
P P P
Sbjct: 3000 --PGPPGP 3005
Score = 32.0 bits (71), Expect = 0.77
Identities = 27/86 (31%), Positives = 30/86 (34%), Gaps = 12/86 (13%)
Query: 17 GPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAAT----TPGPGLETAG 72
GP G P G G S P E +K + LP T PGP
Sbjct: 2786 GPQGPPGPQGP--------NGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGP 2837
Query: 73 PADAPAGAVVGGGSPRGRPGPVPAPG 98
P D G PRG PGP +PG
Sbjct: 2838 PGDRGFTGKDGAMGPRGPPGPPGSPG 2863
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 48.9 bits (115), Expect = 6e-06
Identities = 54/181 (29%), Positives = 65/181 (35%), Gaps = 28/181 (15%)
Query: 18 PAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATTPGPGLETAGPADAP 77
P+G P G + G+ +G + PKE TPG ET GP+ A
Sbjct: 487 PSGHPKAGHSENGVEEDTEGRTGPKEG------------------TPGSPSETPGPSPAG 528
Query: 78 AGAVVGGGSPRGRPGPVPA-PGLLAPLLWERTLPFGDVEYVDLDAFLLEHGLPPSPPPPG 136
SP PGP PA P P P D P P P G
Sbjct: 529 PAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAG 588
Query: 137 GPSPEP--SPARTPAPSP-GP-GSCGSASPRSSPGHAPARAALGTASGHRAGLTSRDTPS 192
EP SP+ TP P P GP G + SP +PG PA A G + +TP
Sbjct: 589 PTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPA-----GDEPAESPSETPG 643
Query: 193 P 193
P
Sbjct: 644 P 644
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 48.9 bits (115), Expect = 6e-06
Identities = 55/210 (26%), Positives = 67/210 (31%), Gaps = 27/210 (12%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATT 63
P + P P PA T P A + PKEPA KE PA TT
Sbjct: 516 PTTPEEPTPTTPEEPAPTTPKAAA----------PNTPKEPAPTTPKE-------PAPTT 558
Query: 64 PGPGLETAGPADAPAGAVVGGGSPRGRPGPV----PAPGLLAPLLWERTLPFGDVEYVDL 119
P T AP + P P PAP LAP + D
Sbjct: 559 PKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTS----TTCDK 614
Query: 120 DAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTAS 179
A G P+ P P+ PA T P + +P + AP A T
Sbjct: 615 PAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTK 674
Query: 180 GHRAGLTSRDTPSPVDPDTVEVLMTFEPDP 209
G + T+ D P+P P EP P
Sbjct: 675 GPTS--TTSDKPAPTTPKETAPTTPKEPAP 702
Score = 38.5 bits (88), Expect = 0.008
Identities = 51/217 (23%), Positives = 63/217 (29%), Gaps = 22/217 (10%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAAL-PAAT 62
P + + PAP PA T P A + PKEPA K+ PA T
Sbjct: 428 PTTPKEPAPTTPKKPAPTTPKEPA----------PTTPKEPAPTTTKKPAPTTPKEPAPT 477
Query: 63 TPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAF 122
TP T P + +P P P LAP E P E
Sbjct: 478 TPKETAPTTPKKLTPTTPEKLAPTTPEKPAPT-TPEELAPTTPEEPTPTTPEEPAPTTPK 536
Query: 123 LLEHGLP----------PSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPAR 172
P P+P P P+P P G P + PA
Sbjct: 537 AAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAP 596
Query: 173 AALGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDP 209
L + T+ D P+P P EP P
Sbjct: 597 KELAPTTTKEPTSTTCDKPAPTTPKGTAPTTPKEPAP 633
Score = 37.4 bits (85), Expect = 0.018
Identities = 61/262 (23%), Positives = 79/262 (30%), Gaps = 24/262 (9%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATT 63
P + + PAP PA T P A + PKEP KE PA TT
Sbjct: 295 PTTPKEPAPTTPKKPAPTTPKEPA----------PTTPKEPTPTTPKEPAPTTKEPAPTT 344
Query: 64 PGPGLETAGPADAPAGAVVGGGSPRGRPGPVPA--PGLLAPLLWERTLPFGDVEYVDLDA 121
P TA AP + P P P P T A
Sbjct: 345 PKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPA 404
Query: 122 FLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPA--RAALGTAS 179
P +P P P+ PA T P P + +P + AP + T +
Sbjct: 405 PTTTKSAPTTPKEPS-PTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTT 463
Query: 180 GHRAGLTSRD----TPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRFSEEEL 235
A T ++ TP P T + L P+ P T + EE
Sbjct: 464 KKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPT 523
Query: 236 -----KPQPIMKKARKIQVPEE 252
+P P KA P+E
Sbjct: 524 PTTPEEPAPTTPKAAAPNTPKE 545
Score = 37.0 bits (84), Expect = 0.024
Identities = 56/225 (24%), Positives = 75/225 (33%), Gaps = 49/225 (21%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATT 63
P + + PAP PA T P G A L KEPA K+ K P TT
Sbjct: 625 PTTPKEPAPTTPKEPAPTTPKGTAPTTL----------KEPAPTTPKKPAPKELAPT-TT 673
Query: 64 PGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAFL 123
GP T+ +D PA +P P P T P
Sbjct: 674 KGP---TSTTSDKPAPTTPKETAPTTPKEPAP------------TTP------------- 705
Query: 124 LEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSP--GHAPARAALGTASGH 181
P+P P P P S TP + P + + S+P P AL S
Sbjct: 706 ----KKPAPTTPETPPPTTSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALEN-SPK 760
Query: 182 RAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPR 226
G+ + TP+ P E+ T + + L + P T P+
Sbjct: 761 EPGVPTTKTPAATKP---EMTTTAKDKTTERDLRTTPETTTAAPK 802
Score = 32.7 bits (73), Expect = 0.45
Identities = 40/169 (23%), Positives = 52/169 (30%), Gaps = 15/169 (8%)
Query: 41 PKEPASCLLKEKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLL 100
PKEPAS KE A TTP T + AP + P P P
Sbjct: 221 PKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKS-APTTPKEPAPTTTKEPAPT-TPKEP 278
Query: 101 APLLWERTLPFGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSA 160
AP + P P +P P +P+ PA T P P +
Sbjct: 279 APTTTKEPAP------------TTTKSAPTTPKEPAPTTPK-KPAPTTPKEPAPTTPKEP 325
Query: 161 SPRSSPGHAPARAALGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDP 209
+P + AP + T+ P+P P EP P
Sbjct: 326 TPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAP 374
Score = 31.6 bits (70), Expect = 1.0
Identities = 38/157 (24%), Positives = 55/157 (35%), Gaps = 14/157 (8%)
Query: 41 PKEPASCLLKEKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLL 100
PKEPA KE PA TTP T AP +P+ P P P
Sbjct: 259 PKEPAPTTTKE-------PAPTTPKEPAPTTTKEPAPTTTKSAPTTPK-EPAPT-TPKKP 309
Query: 101 APLLWERTLPFGDVEYVDLD----AFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGS 156
AP + P E A + P +P P +P+ PA T P P +
Sbjct: 310 APTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPK-KPAPTTPKEPAPTT 368
Query: 157 CGSASPRSSPGHAPARAALGTASGHRAGLTSRDTPSP 193
+P ++ +P + ++ T+ P+P
Sbjct: 369 PKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAP 405
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 48.9 bits (115), Expect = 6e-06
Identities = 55/210 (26%), Positives = 67/210 (31%), Gaps = 27/210 (12%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATT 63
P + P P PA T P A + PKEPA KE PA TT
Sbjct: 557 PTTPEEPTPTTPEEPAPTTPKAAA----------PNTPKEPAPTTPKE-------PAPTT 599
Query: 64 PGPGLETAGPADAPAGAVVGGGSPRGRPGPV----PAPGLLAPLLWERTLPFGDVEYVDL 119
P T AP + P P PAP LAP + D
Sbjct: 600 PKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTS----TTCDK 655
Query: 120 DAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTAS 179
A G P+ P P+ PA T P + +P + AP A T
Sbjct: 656 PAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTK 715
Query: 180 GHRAGLTSRDTPSPVDPDTVEVLMTFEPDP 209
G + T+ D P+P P EP P
Sbjct: 716 GPTS--TTSDKPAPTTPKETAPTTPKEPAP 743
Score = 38.5 bits (88), Expect = 0.008
Identities = 51/217 (23%), Positives = 63/217 (29%), Gaps = 22/217 (10%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAAL-PAAT 62
P + + PAP PA T P A + PKEPA K+ PA T
Sbjct: 469 PTTPKEPAPTTPKKPAPTTPKEPA----------PTTPKEPAPTTTKKPAPTTPKEPAPT 518
Query: 63 TPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAF 122
TP T P + +P P P LAP E P E
Sbjct: 519 TPKETAPTTPKKLTPTTPEKLAPTTPEKPAPT-TPEELAPTTPEEPTPTTPEEPAPTTPK 577
Query: 123 LLEHGLP----------PSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPAR 172
P P+P P P+P P G P + PA
Sbjct: 578 AAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAP 637
Query: 173 AALGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDP 209
L + T+ D P+P P EP P
Sbjct: 638 KELAPTTTKEPTSTTCDKPAPTTPKGTAPTTPKEPAP 674
Score = 37.4 bits (85), Expect = 0.018
Identities = 61/262 (23%), Positives = 79/262 (30%), Gaps = 24/262 (9%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATT 63
P + + PAP PA T P A + PKEP KE PA TT
Sbjct: 336 PTTPKEPAPTTPKKPAPTTPKEPA----------PTTPKEPTPTTPKEPAPTTKEPAPTT 385
Query: 64 PGPGLETAGPADAPAGAVVGGGSPRGRPGPVPA--PGLLAPLLWERTLPFGDVEYVDLDA 121
P TA AP + P P P P T A
Sbjct: 386 PKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPA 445
Query: 122 FLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPA--RAALGTAS 179
P +P P P+ PA T P P + +P + AP + T +
Sbjct: 446 PTTTKSAPTTPKEPS-PTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTT 504
Query: 180 GHRAGLTSRD----TPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRFSEEEL 235
A T ++ TP P T + L P+ P T + EE
Sbjct: 505 KKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPT 564
Query: 236 -----KPQPIMKKARKIQVPEE 252
+P P KA P+E
Sbjct: 565 PTTPEEPAPTTPKAAAPNTPKE 586
Score = 37.0 bits (84), Expect = 0.024
Identities = 56/225 (24%), Positives = 75/225 (33%), Gaps = 49/225 (21%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATT 63
P + + PAP PA T P G A L KEPA K+ K P TT
Sbjct: 666 PTTPKEPAPTTPKEPAPTTPKGTAPTTL----------KEPAPTTPKKPAPKELAPT-TT 714
Query: 64 PGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAFL 123
GP T+ +D PA +P P P T P
Sbjct: 715 KGP---TSTTSDKPAPTTPKETAPTTPKEPAP------------TTP------------- 746
Query: 124 LEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSP--GHAPARAALGTASGH 181
P+P P P P S TP + P + + S+P P AL S
Sbjct: 747 ----KKPAPTTPETPPPTTSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALEN-SPK 801
Query: 182 RAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPR 226
G+ + TP+ P E+ T + + L + P T P+
Sbjct: 802 EPGVPTTKTPAATKP---EMTTTAKDKTTERDLRTTPETTTAAPK 843
Score = 32.7 bits (73), Expect = 0.45
Identities = 40/169 (23%), Positives = 52/169 (30%), Gaps = 15/169 (8%)
Query: 41 PKEPASCLLKEKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLL 100
PKEPAS KE A TTP T + AP + P P P
Sbjct: 262 PKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKS-APTTPKEPAPTTTKEPAPT-TPKEP 319
Query: 101 APLLWERTLPFGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSA 160
AP + P P +P P +P+ PA T P P +
Sbjct: 320 APTTTKEPAP------------TTTKSAPTTPKEPAPTTPK-KPAPTTPKEPAPTTPKEP 366
Query: 161 SPRSSPGHAPARAALGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDP 209
+P + AP + T+ P+P P EP P
Sbjct: 367 TPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAP 415
Score = 31.6 bits (70), Expect = 1.0
Identities = 38/157 (24%), Positives = 55/157 (35%), Gaps = 14/157 (8%)
Query: 41 PKEPASCLLKEKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLL 100
PKEPA KE PA TTP T AP +P+ P P P
Sbjct: 300 PKEPAPTTTKE-------PAPTTPKEPAPTTTKEPAPTTTKSAPTTPK-EPAPT-TPKKP 350
Query: 101 APLLWERTLPFGDVEYVDLD----AFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGS 156
AP + P E A + P +P P +P+ PA T P P +
Sbjct: 351 APTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPK-KPAPTTPKEPAPTT 409
Query: 157 CGSASPRSSPGHAPARAALGTASGHRAGLTSRDTPSP 193
+P ++ +P + ++ T+ P+P
Sbjct: 410 PKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAP 446
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 48.9 bits (115), Expect = 6e-06
Identities = 55/210 (26%), Positives = 67/210 (31%), Gaps = 27/210 (12%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATT 63
P + P P PA T P A + PKEPA KE PA TT
Sbjct: 609 PTTPEEPTPTTPEEPAPTTPKAAA----------PNTPKEPAPTTPKE-------PAPTT 651
Query: 64 PGPGLETAGPADAPAGAVVGGGSPRGRPGPV----PAPGLLAPLLWERTLPFGDVEYVDL 119
P T AP + P P PAP LAP + D
Sbjct: 652 PKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTS----TTCDK 707
Query: 120 DAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTAS 179
A G P+ P P+ PA T P + +P + AP A T
Sbjct: 708 PAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTK 767
Query: 180 GHRAGLTSRDTPSPVDPDTVEVLMTFEPDP 209
G + T+ D P+P P EP P
Sbjct: 768 GPTS--TTSDKPAPTTPKETAPTTPKEPAP 795
Score = 38.5 bits (88), Expect = 0.008
Identities = 51/217 (23%), Positives = 63/217 (29%), Gaps = 22/217 (10%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAAL-PAAT 62
P + + PAP PA T P A + PKEPA K+ PA T
Sbjct: 521 PTTPKEPAPTTPKKPAPTTPKEPA----------PTTPKEPAPTTTKKPAPTTPKEPAPT 570
Query: 63 TPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAF 122
TP T P + +P P P LAP E P E
Sbjct: 571 TPKETAPTTPKKLTPTTPEKLAPTTPEKPAPT-TPEELAPTTPEEPTPTTPEEPAPTTPK 629
Query: 123 LLEHGLP----------PSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPAR 172
P P+P P P+P P G P + PA
Sbjct: 630 AAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAP 689
Query: 173 AALGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDP 209
L + T+ D P+P P EP P
Sbjct: 690 KELAPTTTKEPTSTTCDKPAPTTPKGTAPTTPKEPAP 726
Score = 37.4 bits (85), Expect = 0.018
Identities = 61/262 (23%), Positives = 79/262 (30%), Gaps = 24/262 (9%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATT 63
P + + PAP PA T P A + PKEP KE PA TT
Sbjct: 388 PTTPKEPAPTTPKKPAPTTPKEPA----------PTTPKEPTPTTPKEPAPTTKEPAPTT 437
Query: 64 PGPGLETAGPADAPAGAVVGGGSPRGRPGPVPA--PGLLAPLLWERTLPFGDVEYVDLDA 121
P TA AP + P P P P T A
Sbjct: 438 PKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPA 497
Query: 122 FLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPA--RAALGTAS 179
P +P P P+ PA T P P + +P + AP + T +
Sbjct: 498 PTTTKSAPTTPKEPS-PTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTT 556
Query: 180 GHRAGLTSRD----TPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRFSEEEL 235
A T ++ TP P T + L P+ P T + EE
Sbjct: 557 KKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPT 616
Query: 236 -----KPQPIMKKARKIQVPEE 252
+P P KA P+E
Sbjct: 617 PTTPEEPAPTTPKAAAPNTPKE 638
Score = 37.0 bits (84), Expect = 0.024
Identities = 56/225 (24%), Positives = 75/225 (33%), Gaps = 49/225 (21%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATT 63
P + + PAP PA T P G A L KEPA K+ K P TT
Sbjct: 718 PTTPKEPAPTTPKEPAPTTPKGTAPTTL----------KEPAPTTPKKPAPKELAPT-TT 766
Query: 64 PGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAFL 123
GP T+ +D PA +P P P T P
Sbjct: 767 KGP---TSTTSDKPAPTTPKETAPTTPKEPAP------------TTP------------- 798
Query: 124 LEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSP--GHAPARAALGTASGH 181
P+P P P P S TP + P + + S+P P AL S
Sbjct: 799 ----KKPAPTTPETPPPTTSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALEN-SPK 853
Query: 182 RAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPR 226
G+ + TP+ P E+ T + + L + P T P+
Sbjct: 854 EPGVPTTKTPAATKP---EMTTTAKDKTTERDLRTTPETTTAAPK 895
Score = 32.7 bits (73), Expect = 0.45
Identities = 40/169 (23%), Positives = 52/169 (30%), Gaps = 15/169 (8%)
Query: 41 PKEPASCLLKEKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLL 100
PKEPAS KE A TTP T + AP + P P P
Sbjct: 314 PKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKS-APTTPKEPAPTTTKEPAPT-TPKEP 371
Query: 101 APLLWERTLPFGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSA 160
AP + P P +P P +P+ PA T P P +
Sbjct: 372 APTTTKEPAP------------TTTKSAPTTPKEPAPTTPK-KPAPTTPKEPAPTTPKEP 418
Query: 161 SPRSSPGHAPARAALGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDP 209
+P + AP + T+ P+P P EP P
Sbjct: 419 TPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAP 467
Score = 31.6 bits (70), Expect = 1.0
Identities = 38/157 (24%), Positives = 55/157 (35%), Gaps = 14/157 (8%)
Query: 41 PKEPASCLLKEKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLL 100
PKEPA KE PA TTP T AP +P+ P P P
Sbjct: 352 PKEPAPTTTKE-------PAPTTPKEPAPTTTKEPAPTTTKSAPTTPK-EPAPT-TPKKP 402
Query: 101 APLLWERTLPFGDVEYVDLD----AFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGS 156
AP + P E A + P +P P +P+ PA T P P +
Sbjct: 403 APTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPK-KPAPTTPKEPAPTT 461
Query: 157 CGSASPRSSPGHAPARAALGTASGHRAGLTSRDTPSP 193
+P ++ +P + ++ T+ P+P
Sbjct: 462 PKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAP 498
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 48.9 bits (115), Expect = 6e-06
Identities = 55/210 (26%), Positives = 67/210 (31%), Gaps = 27/210 (12%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATT 63
P + P P PA T P A + PKEPA KE PA TT
Sbjct: 650 PTTPEEPTPTTPEEPAPTTPKAAA----------PNTPKEPAPTTPKE-------PAPTT 692
Query: 64 PGPGLETAGPADAPAGAVVGGGSPRGRPGPV----PAPGLLAPLLWERTLPFGDVEYVDL 119
P T AP + P P PAP LAP + D
Sbjct: 693 PKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTS----TTCDK 748
Query: 120 DAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTAS 179
A G P+ P P+ PA T P + +P + AP A T
Sbjct: 749 PAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTK 808
Query: 180 GHRAGLTSRDTPSPVDPDTVEVLMTFEPDP 209
G + T+ D P+P P EP P
Sbjct: 809 GPTS--TTSDKPAPTTPKETAPTTPKEPAP 836
Score = 38.5 bits (88), Expect = 0.008
Identities = 51/217 (23%), Positives = 63/217 (29%), Gaps = 22/217 (10%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAAL-PAAT 62
P + + PAP PA T P A + PKEPA K+ PA T
Sbjct: 562 PTTPKEPAPTTPKKPAPTTPKEPA----------PTTPKEPAPTTTKKPAPTTPKEPAPT 611
Query: 63 TPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAF 122
TP T P + +P P P LAP E P E
Sbjct: 612 TPKETAPTTPKKLTPTTPEKLAPTTPEKPAPT-TPEELAPTTPEEPTPTTPEEPAPTTPK 670
Query: 123 LLEHGLP----------PSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPAR 172
P P+P P P+P P G P + PA
Sbjct: 671 AAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAP 730
Query: 173 AALGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDP 209
L + T+ D P+P P EP P
Sbjct: 731 KELAPTTTKEPTSTTCDKPAPTTPKGTAPTTPKEPAP 767
Score = 37.4 bits (85), Expect = 0.018
Identities = 61/262 (23%), Positives = 79/262 (30%), Gaps = 24/262 (9%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATT 63
P + + PAP PA T P A + PKEP KE PA TT
Sbjct: 429 PTTPKEPAPTTPKKPAPTTPKEPA----------PTTPKEPTPTTPKEPAPTTKEPAPTT 478
Query: 64 PGPGLETAGPADAPAGAVVGGGSPRGRPGPVPA--PGLLAPLLWERTLPFGDVEYVDLDA 121
P TA AP + P P P P T A
Sbjct: 479 PKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPA 538
Query: 122 FLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPA--RAALGTAS 179
P +P P P+ PA T P P + +P + AP + T +
Sbjct: 539 PTTTKSAPTTPKEPS-PTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTT 597
Query: 180 GHRAGLTSRD----TPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRFSEEEL 235
A T ++ TP P T + L P+ P T + EE
Sbjct: 598 KKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPT 657
Query: 236 -----KPQPIMKKARKIQVPEE 252
+P P KA P+E
Sbjct: 658 PTTPEEPAPTTPKAAAPNTPKE 679
Score = 37.0 bits (84), Expect = 0.024
Identities = 56/225 (24%), Positives = 75/225 (33%), Gaps = 49/225 (21%)
Query: 4 PVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATT 63
P + + PAP PA T P G A L KEPA K+ K P TT
Sbjct: 759 PTTPKEPAPTTPKEPAPTTPKGTAPTTL----------KEPAPTTPKKPAPKELAPT-TT 807
Query: 64 PGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAFL 123
GP T+ +D PA +P P P T P
Sbjct: 808 KGP---TSTTSDKPAPTTPKETAPTTPKEPAP------------TTP------------- 839
Query: 124 LEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSP--GHAPARAALGTASGH 181
P+P P P P S TP + P + + S+P P AL S
Sbjct: 840 ----KKPAPTTPETPPPTTSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALEN-SPK 894
Query: 182 RAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPR 226
G+ + TP+ P E+ T + + L + P T P+
Sbjct: 895 EPGVPTTKTPAATKP---EMTTTAKDKTTERDLRTTPETTTAAPK 936
Score = 32.7 bits (73), Expect = 0.45
Identities = 40/169 (23%), Positives = 52/169 (30%), Gaps = 15/169 (8%)
Query: 41 PKEPASCLLKEKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLL 100
PKEPAS KE A TTP T + AP + P P P
Sbjct: 355 PKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKS-APTTPKEPAPTTTKEPAPT-TPKEP 412
Query: 101 APLLWERTLPFGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSA 160
AP + P P +P P +P+ PA T P P +
Sbjct: 413 APTTTKEPAP------------TTTKSAPTTPKEPAPTTPK-KPAPTTPKEPAPTTPKEP 459
Query: 161 SPRSSPGHAPARAALGTASGHRAGLTSRDTPSPVDPDTVEVLMTFEPDP 209
+P + AP + T+ P+P P EP P
Sbjct: 460 TPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAP 508
Score = 31.6 bits (70), Expect = 1.0
Identities = 38/157 (24%), Positives = 55/157 (35%), Gaps = 14/157 (8%)
Query: 41 PKEPASCLLKEKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLL 100
PKEPA KE PA TTP T AP +P+ P P P
Sbjct: 393 PKEPAPTTTKE-------PAPTTPKEPAPTTTKEPAPTTTKSAPTTPK-EPAPT-TPKKP 443
Query: 101 APLLWERTLPFGDVEYVDLD----AFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGS 156
AP + P E A + P +P P +P+ PA T P P +
Sbjct: 444 APTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPK-KPAPTTPKEPAPTT 502
Query: 157 CGSASPRSSPGHAPARAALGTASGHRAGLTSRDTPSP 193
+P ++ +P + ++ T+ P+P
Sbjct: 503 PKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAP 539
>gi|194363725 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform c [Homo sapiens]
Length = 1152
Score = 48.9 bits (115), Expect = 6e-06
Identities = 50/161 (31%), Positives = 63/161 (39%), Gaps = 25/161 (15%)
Query: 50 KEKERKAALPAATTPGPGLETAGP------ADAPAGAV---VGGGSPRGRPGPVPAPGLL 100
++++ ALP + P P AGP A APA V G G+P G GP G
Sbjct: 988 QQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIGQA 1047
Query: 101 APLLW-ERTLPFGDVEYVDLDAFLLEHGLPPSPPPPG--GPSPEPSPARTPAPSPG--PG 155
++ P G + +PP PPPG GPSP P+ P+ PG PG
Sbjct: 1048 GSTAGPQQQQPAGAPQ---------PGAVPPGVPPPGPHGPSPFPNQQTPPSMMPGAVPG 1098
Query: 156 SCGSASPRSSPGHAPARAALGTASGHRAGLTSRDTPSPVDP 196
S SP A A G + L TP P DP
Sbjct: 1099 SGHPGVAAQSP--AIVAAVQGNLLPSASPLPDPGTPLPPDP 1137
Score = 30.8 bits (68), Expect = 1.7
Identities = 41/157 (26%), Positives = 58/157 (36%), Gaps = 9/157 (5%)
Query: 12 PLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEPASCLLKEKERKAALPAATTPGPGLETA 71
P+ G AG P G + S++ + P L ++ A +T GP +
Sbjct: 1002 PIPPTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIGQA---GSTAGP--QQQ 1056
Query: 72 GPADAPA-GAVVGGGSPRGRPGPVPAPGLLAP-LLWERTLPFGDVEYVDLDAFLLEHGLP 129
PA AP GAV G P G GP P P P + +P V + + +
Sbjct: 1057 QPAGAPQPGAVPPGVPPPGPHGPSPFPNQQTPPSMMPGAVPGSGHPGVAAQSPAIVAAVQ 1116
Query: 130 PSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSP 166
+ P SP P P P P S G+ +P P
Sbjct: 1117 GNLLPSA--SPLPDPGTPLPPDPTAPSPGTVTPVPPP 1151
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 48.5 bits (114), Expect = 8e-06
Identities = 60/226 (26%), Positives = 82/226 (36%), Gaps = 45/226 (19%)
Query: 2 ARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSKPKEP--------ASCLLKEKE 53
A P TPAP PA P A R+ + +P P + +++
Sbjct: 503 AVPTPATTPAPAPAPAPAPAPALASAATKERTESEVPPRPASPKVTRSPPETAAPVEDMA 562
Query: 54 RKAALPAATTPG-PGLETAGPADAPAGAVV--GGGSPRGRPGPVPAPGLLAPLLWERTLP 110
R+ PA P P + +G +P + G GSP G P +P L+ L T+P
Sbjct: 563 RRTKRPAPARPTMPPPQVSGSRSSPPAPPLPPGSGSP-GTPQALPRR-LVGSSLRAPTVP 620
Query: 111 FGDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAP 170
PP PP P P P +R SP P S G ASP P
Sbjct: 621 ------------------PPLPPTP--PQPARRQSRRSPASPSPASPGPASPSPVSLSNP 660
Query: 171 ARAALGTAS---GHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLA 213
A+ LG A+ G ++ TP + P +P P LA
Sbjct: 661 AQVDLGAATAEGGAPEAISGVPTPPAIPP---------QPRPRSLA 697
Score = 30.8 bits (68), Expect = 1.7
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 123 LLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAA 174
L LP + P +P P+PA PAP+P S +A+ + P R A
Sbjct: 494 LASEELPSTAVPTPATTPAPAPAPAPAPAPALAS--AATKERTESEVPPRPA 543
>gi|153791535 general control of amino acid synthesis 5-like 2 [Homo
sapiens]
Length = 837
Score = 48.1 bits (113), Expect = 1e-05
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 123 LLEHGLPPSPPPPGGPSP--EPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASG 180
+ E P+P P P P P+PA TP P+P P S +P +P APA A G+
Sbjct: 1 MAEPSQAPTPAPAAQPRPLQSPAPAPTPTPAPSPASAPIPTPTPAPAPAPAAAPAGSTGT 60
Query: 181 HRAGLTSRDTPSPVDP 196
G+ S S DP
Sbjct: 61 GGPGVGSGGAGSGGDP 76
Score = 40.4 bits (93), Expect = 0.002
Identities = 32/111 (28%), Positives = 37/111 (33%), Gaps = 37/111 (33%)
Query: 71 AGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFGDVEYVDLDAFLLEHGLPP 130
A P+ AP A P P P P P P
Sbjct: 2 AEPSQAPTPAPAAQPRPLQSPAPAPTP-------------------------------TP 30
Query: 131 SPPPPGGPSPEPSPARTPAPSPGP-GSCGSASPRSSPGHA-----PARAAL 175
+P P P P P+PA PAP+ P GS G+ P G A PAR L
Sbjct: 31 APSPASAPIPTPTPAPAPAPAAAPAGSTGTGGPGVGSGGAGSGGDPARPGL 81
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.133 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,069,322
Number of Sequences: 37866
Number of extensions: 1490160
Number of successful extensions: 34316
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 1538
Number of HSP's that attempted gapping in prelim test: 12131
Number of HSP's gapped (non-prelim): 12191
length of query: 325
length of database: 18,247,518
effective HSP length: 102
effective length of query: 223
effective length of database: 14,385,186
effective search space: 3207896478
effective search space used: 3207896478
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.