Guide to the Human Genome
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Name: SMARCC2 Sequence: fasta or formatted (1152aa) NCBI GI: 194363725
Description:

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c2 isoform c

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt prot [1214aa] SWI/SNF-related matrix-associated actin-dependent regulator of ch...
alt prot [1130aa] SWI/SNF-related matrix-associated actin-dependent regulator of ch...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7        100           5
 C cysteine            0.6          7           1
 D aspartate           5.6         65           2
 E glutamate           9.9        114           4
 F phenylalanine       2.3         27           2
 G glycine             6.3         73           3
 H histidine           2.2         25           2
 I isoleucine          3.0         34           3
 K lysine              8.4         97           3
 L leucine             6.7         77           4
 M methionine          2.2         25           2
 N asparagine          3.6         42           2
 P proline             9.9        114           3
 Q glutamine           5.0         58           5
 R arginine            4.2         48           2
 S serine              6.4         74           2
 T threonine           5.6         64           2
 V valine              6.2         71           2
 W tryptophan          1.0         11           1
 Y tyrosine            2.3         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SWI/SNF-related matrix-associated actin-dependent r... 
SMARCC2               0.977   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.928   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC1               0.567   SWI/SNF-related matrix-associated actin-dependent r...
SFPQ                  0.022   splicing factor proline/glutamine rich (polypyrimidin...
FMN2                  0.022   formin 2 
FMNL1                 0.022   formin-like 1 
WBP11                 0.021   WW domain binding protein 11 
NACA                  0.020   nascent polypeptide-associated complex alpha subuni...
VPS37C                0.020   vacuolar protein sorting 37C 
COL8A1                0.019   alpha 1 type VIII collagen precursor 
COL8A1                0.019   alpha 1 type VIII collagen precursor 
PCLO                  0.019   piccolo isoform 2 
PCLO                  0.019   piccolo isoform 1 
BRD4                  0.019   bromodomain-containing protein 4 isoform long 
DIAPH1                0.019   diaphanous 1 isoform 2 
DIAPH1                0.019   diaphanous 1 isoform 1 
CPSF6                 0.019   cleavage and polyadenylation specific factor 6, 68 ...
MYSM1                 0.019   Myb-like, SWIRM and MPN domains 1 
WAS                   0.018   Wiskott-Aldrich syndrome protein 
FLJ22184              0.018   PREDICTED: hypothetical protein FLJ22184 
NCOR2                 0.018   nuclear receptor co-repressor 2 isoform 1 
YLPM1                 0.018   YLP motif containing 1 
FLJ22184              0.017   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.017   PREDICTED: hypothetical protein LOC80164 
IQSEC2                0.017   IQ motif and Sec7 domain 2 isoform1 
ESX1                  0.017   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
CNOT3                 0.017   CCR4-NOT transcription complex, subunit 3 
CEL                   0.017   carboxyl ester lipase precursor 
MED15                 0.017   mediator complex subunit 15 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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